TkA04G388110 | RubberDandelionOmics

Gene overview

TkA04G388110

Reference: TK1151 Chr: Chr04 Coordinates: 97632459-97634227 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

672 bp · TkA04G388110|TK1151|cDNA

ATGGATTCGAATCTGCTTTCGTCGGTATCTAACATTAGAAACGGTGGAAATTCGGTTGATGTTATTGCACTTGGAGGATTTGGTGATAAGATTTTGTTTTTTTACTGCTGGGATAAGCTTTTGGATACCAGGATTCCCCCTGTCAGTTCTTCTTTTGTCATGATAGTTGAGGTTGTATGTTGCAAACTCACTCCTCTCCAAACAGCACTGTACACTCACTTTATTCACTCAAAAAATGTGAAAAAAGCAATTGTTGAAGA...

CDS

Download CDS FASTA

672 bp · TkA04G388110|TK1151|CDS

ATGGATTCGAATCTGCTTTCGTCGGTATCTAACATTAGAAACGGTGGAAATTCGGTTGATGTTATTGCACTTGGAGGATTTGGTGATAAGATTTTGTTTTTTTACTGCTGGGATAAGCTTTTGGATACCAGGATTCCCCCTGTCAGTTCTTCTTTTGTCATGATAGTTGAGGTTGTATGTTGCAAACTCACTCCTCTCCAAACAGCACTGTACACTCACTTTATTCACTCAAAAAATGTGAAAAAAGCAATTGTTGAAGA...

Protein

Download Protein FASTA

223 aa · TkA04G388110|TK1151|PROTEIN

MDSNLLSSVSNIRNGGNSVDVIALGGFGDKILFFYCWDKLLDTRIPPVSSSFVMIVEVVCCKLTPLQTALYTHFIHSKNVKKAIVEDVKQTKILAYITALKKLCNHPKLIYDTMKSGKPGTAGFENCMRFFPPVMFSGRSGSWTGGDGSWVELSGKMQVLARLLAHLRKKTDDRISNYTQTLDLIVQLCRERRYPFLRLDGSTSISKRQKLVNCFNDQSKVFN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G388110`
TK1151 ID	TkA04G388110
OH-1004 ID	LXL04_038373
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	86.700
Protein coverage (%)	TK1151 95.067 / OH-1004 90.226 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G388110

Location Chr04:97632459-97634227 (+)

Description Similar to CHR25: Protein CHROMATIN REMODELING 25

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g19210`	Dissociates RAD51 from nucleoprotein filaments formed on dsDNA.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0762800`	Multifunctional ATPase that plays a role in homologous recombination (HR) which is a major pathway for repairing DNA double-strand breaks (DSBs), single-stranded DNA (ssDNA) gaps, and stalled or collapsed replication forks.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038373 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000711 meiotic DNA repair synthesis Biological Process

GO:0000724 double-strand break repair via homologous recombination Biological Process

GO:0006302 double-strand break repair Biological Process

GO:0006338 chromatin remodeling Biological Process

GO:0006974 DNA damage response Biological Process

GO:0007131 reciprocal meiotic recombination Biological Process

GO:0008340 determination of adult lifespan Biological Process

GO:0009410 response to xenobiotic stimulus Biological Process

GO:0010212 response to ionizing radiation Biological Process

GO:0010332 response to gamma radiation Biological Process

GO:0043150 DNA synthesis involved in double-strand break repair via homologous recombination Biological Process

GO:0045003 double-strand break repair via synthesis-dependent strand annealing Biological Process

KEGG gene cross-reference

ath:AT3G19210

dmo:Dmoj_GI10760

dosa:Os02g0762800

dvi:6634100

mmu:19366

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.580

Rank 1 · TkA04G388110 · TK1151

Cytoplasm0.336

Rank 2 · TkA04G388110 · TK1151

Mitochondrion0.105

Rank 3 · TkA04G388110 · TK1151

Cell membrane0.032

Rank 4 · TkA04G388110 · TK1151

Endoplasmic reticulum0.027

Rank 5 · TkA04G388110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00176SNF2-rel_dom56-109 aa

PF00271Helicase_C77-90 aa

PF00271Helicase_C156-219 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G388110	`PF00176`	SNF2-rel_dom	56	109	8.7e-06	25.8
TkA04G388110	`PF00271`	Helicase_C	77	90	0.0001	23.3
TkA04G388110	`PF00271`	Helicase_C	156	219	0.0001	23.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q0PCS3`	Arabidopsis thaliana	sp\|Q0PCS3\|CHR25_ARATH Protein CHROMATIN REMODELING 25	72.600%	Swiss-Prot	High
`A4PBL4`	Oryza sativa subsp. japonica	sp\|A4PBL4\|RAD54_ORYSJ DNA repair and recombination protein RAD54	73.100%	Swiss-Prot	High

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