TkA04G374170 | RubberDandelionOmics

Gene overview

TkA04G374170

Reference: TK1151 Chr: Chr04 Coordinates: 94048732-94050911 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1824 bp · TkA04G374170|TK1151|cDNA

GTAAATTGTTGAAAGTGGAAGTATAATGCTTGCTTTTTGTGTATGAATGCTTCTCCATAAAACAAGGAAAAAGGAAAAATATGGATGTTTTATTTTCTTTTTTTTCCCCAAGGTTTCAAGAACTCATTGCAAGTCATGAAGAAATAATATCCACACGGAAATATCGTTCACACACCACCCACACTCCTTCTAGGATTCTTCCATCTTTCCTACTTGTTTCCTAATAAATTCTCCATAACGCAGTCAACCAACCAATCCTT...

CDS

Download CDS FASTA

1155 bp · TkA04G374170|TK1151|CDS

ATGGGTAAGTTCTTGAGTCTTCTTTTTTGCATCTTGATATCGAATCTCGCCGGATTAAATGCTCAATCTTGCGAAACTGCCGCCTTTCGAAACAACGCTATCTACCGCACCTGCGTCTCTTTACCGGTTCTGAACTCGCATCTTCACTGGAACTACAACACCAACGGCACCGTCGACTTGGCTTTCCGGCACACCGGATCAGCCACATCTCAATGGGTTGCGTGGGCCCTCAACGTCGGCGGGTCGGGTATGCTCGGAGC...

Protein

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384 aa · TkA04G374170|TK1151|PROTEIN

MGKFLSLLFCILISNLAGLNAQSCETAAFRNNAIYRTCVSLPVLNSHLHWNYNTNGTVDLAFRHTGSATSQWVAWALNVGGSGMLGAQALVALTHPNGSVEAYTTSVTGFQTTLQPSRLSFDVPTITAERVNGVVVIYATIVLPSGGTGFNQVWQVGPVADGVPSIHAMGADNRGSVGRVDFISGQTSAGGGAGGSRMRKRNTHGVLNAVSWGLLMPMGAMAARYLKVFKAANPAWFYIHAACQTSAYIVGVAGWATGLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G374170`
TK1151 ID	TkA04G374170
OH-1004 ID	LXL04_038010
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G374170

Location Chr04:94048732-94050911 (+)

Description Similar to At5g35735: Cytochrome b561 and DOMON domain-containing protein At5g35735

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g35735`	May act as a catecholamine-responsive trans-membrane electron transporter.	No verified direct reference in this release
`At4g17280`	May act as a catecholamine-responsive trans-membrane electron transporter.	No verified direct reference in this release
`At5g47530`	May act as a catecholamine-responsive trans-membrane electron transporter.	No verified direct reference in this release
`At4g12980`	May act as a catecholamine-responsive trans-membrane electron transporter.	No verified direct reference in this release
`At3g25290`	May act as a catecholamine-responsive trans-membrane electron transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038010 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0080022 primary root development Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0000293 ferric-chelate reductase activity Molecular Function

GO:0009055 electron transfer activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G25290

ath:AT4G12980

ath:AT4G17280

ath:AT5G35735

ath:AT5G47530

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.782

Rank 1 · TkA04G374170 · TK1151

Cytoplasm0.114

Rank 2 · TkA04G374170 · TK1151

Lysosome / Vacuole0.089

Rank 3 · TkA04G374170 · TK1151

Endoplasmic reticulum0.065

Rank 4 · TkA04G374170 · TK1151

Golgi apparatus0.045

Rank 5 · TkA04G374170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03351DOMON47-137 aa

PF04526DUF56884-182 aa

PF03188Cytochrom_B561204-328 aa

PF17627IncE242-289 aa

PF03351DOMON298-309 aa

PF17627IncE341-362 aa

PF03188Cytochrom_B561350-354 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G374170	`PF03351`	DOMON	47	137	0.015	16.2
TkA04G374170	`PF04526`	DUF568	84	182	5.1e-23	82.4
TkA04G374170	`PF03188`	Cytochrom_B561	204	328	1e-06	29.8
TkA04G374170	`PF17627`	IncE	242	289	0.45	11.3
TkA04G374170	`PF03351`	DOMON	298	309	0.015	16.2
TkA04G374170	`PF17627`	IncE	341	362	0.45	11.3
TkA04G374170	`PF03188`	Cytochrom_B561	350	354	1e-06	29.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FKH6`	Arabidopsis thaliana	sp\|Q9FKH6\|B561P_ARATH Cytochrome b561 and DOMON domain-containing protein At5g35735	57.000%	Swiss-Prot	High
`Q8VYH6`	Arabidopsis thaliana	sp\|Q8VYH6\|B651B_ARATH Cytochrome b561 and DOMON domain-containing protein At4g17280	49.600%	Swiss-Prot	Medium
`Q9FGK4`	Arabidopsis thaliana	sp\|Q9FGK4\|B561J_ARATH Cytochrome b561 and DOMON domain-containing protein At5g47530	48.600%	Swiss-Prot	Medium
`Q9SV71`	Arabidopsis thaliana	sp\|Q9SV71\|B561O_ARATH Cytochrome b561 and DOMON domain-containing protein At4g12980	48.900%	Swiss-Prot	Medium
`Q9LSE7`	Arabidopsis thaliana	sp\|Q9LSE7\|B561C_ARATH Cytochrome b561 and DOMON domain-containing protein At3g25290	46.300%	Swiss-Prot	Medium

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