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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G369700
Reference: TK1151 Chr: Chr04 Coordinates: 92926865-92928238 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1065 bp · TkA04G369700|TK1151|cDNA

ATGGTCGATCTCAAAGTGGACATTGATATCGCCACTATTGTTTCAATTCTTCCCACTTGTGCCTACCTAAAAGAACTAGAAACCGGAAGAAAGATTCATCATTTGGCGAAAAAGAACAATTTGTACGAAAATCTATTTGTTAGAAACGCTTTAATAGACATGTACGTAAAATGCGGTCAAATGGAAGATGCAAGAATTATATTCAATGAAACTAGTCAACGAGATGTAGTGACATGGACTTCAATGATAAATGGATACAT...

CDS

Download CDS FASTA

1065 bp · TkA04G369700|TK1151|CDS

ATGGTCGATCTCAAAGTGGACATTGATATCGCCACTATTGTTTCAATTCTTCCCACTTGTGCCTACCTAAAAGAACTAGAAACCGGAAGAAAGATTCATCATTTGGCGAAAAAGAACAATTTGTACGAAAATCTATTTGTTAGAAACGCTTTAATAGACATGTACGTAAAATGCGGTCAAATGGAAGATGCAAGAATTATATTCAATGAAACTAGTCAACGAGATGTAGTGACATGGACTTCAATGATAAATGGATACAT...

Protein

Download Protein FASTA

354 aa · TkA04G369700|TK1151|PROTEIN

MVDLKVDIDIATIVSILPTCAYLKELETGRKIHHLAKKNNLYENLFVRNALIDMYVKCGQMEDARIIFNETSQRDVVTWTSMINGYIVNGDTKTAISLCQLMNHEGHVNPNAFTLASLLSACADLNHLKHGKTLHQWAIKNNLETDVNVETGLIDMYAKCNFITYTFRTFNKTSKTKTAPWNAVLSGYGKHGNGEGAVTLFNQMIESKVTPNEVTFTSILHACSHSGLVEDGLRLFKMMQDYEIAPRPYHYACVVDLLGR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G369700
TK1151 IDTkA04G369700
OH-1004 IDLXL04_013175
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)38.200
Protein coverage (%)TK1151 99.435 / OH-1004 54.058
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G369700
LocationChr04:92926865-92928238 (-)
DescriptionSimilar to PCMP-H34: Pentatricopeptide repeat-containing protein At3g26782, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g39350 Pentatricopeptide repeat-containing protein At5g39350. No verified direct reference in this release
At2g03380 Pentatricopeptide repeat-containing protein At2g03380, mitochondrial. No verified direct reference in this release
At4g33990 Pentatricopeptide repeat-containing protein At4g33990. No verified direct reference in this release
At3g57430 Involved in RNA editing events in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472
At3g01580 Putative pentatricopeptide repeat-containing protein At3g01580. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013175 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G08070
ath:AT3G12770
ath:AT3G26782
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.689
Rank 1 · TkA04G369700 · TK1151
Plastid0.155
Rank 2 · TkA04G369700 · TK1151
Nucleus0.045
Rank 3 · TkA04G369700 · TK1151
Cytoplasm0.032
Rank 4 · TkA04G369700 · TK1151
Cell membrane0.005
Rank 5 · TkA04G369700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13812PPR_31-57 aa
PF00637Clathrin43-71 aa
PF13041PPR_247-70 aa
PF23276TPR_2447-65 aa
PF29070MSC6_N47-129 aa
PF14559TPR_1948-74 aa
PF01535PPR49-70 aa
PF12854PPR_149-70 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G369700PF13812PPR_31572.4e-1763.5
TkA04G369700PF00637Clathrin43710.1412.6
TkA04G369700PF13041PPR_247701.9e-33115.1
TkA04G369700PF23276TPR_2447651.7e-1041.6
TkA04G369700PF29070MSC6_N471291.5e-0938.1
TkA04G369700PF14559TPR_1948744.2e-0524.5
TkA04G369700PF01535PPR49703.8e-38127.8
TkA04G369700PF12854PPR_149704.4e-2175.0
TkA04G369700PF17177PPR_long501313.2e-0937.2
TkA04G369700PF13428TPR_1450700.000621.0
TkA04G369700PF13424TPR_1250720.2612.2
TkA04G369700PF13176TPR_753640.001818.9
TkA04G369700PF29407CFAP70_TPR_C53730.01115.9
TkA04G369700PF07719TPR_255700.1912.7
TkA04G369700PF13812PPR_3731232.4e-1763.5
TkA04G369700PF13041PPR_2741231.9e-33115.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FLZ9Arabidopsis thalianasp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g3935038.500%Swiss-ProtMedium
Q9ZQ74Arabidopsis thalianasp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380, mitochondrial37.200%Swiss-ProtMedium
O81767Arabidopsis thalianasp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g3399034.600%Swiss-ProtMedium
Q7Y211Arabidopsis thalianasp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic35.800%Swiss-ProtMedium
Q9SS97Arabidopsis thalianasp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g0158033.100%Swiss-ProtMedium

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