TkA04G368370 | RubberDandelionOmics

Gene overview

TkA04G368370

Reference: TK1151 Chr: Chr04 Coordinates: 92614639-92620704 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2774 bp · TkA04G368370|TK1151|cDNA

AAAAGTGGTTGATGGCAGAAGTTGCTACGGTCCAAAACAATGCCTTGAACCCAAGCATTCGACTGTGGGGATGGAGAAAGACACGTAATGCAATGGTGAACCAATCAATAGGGACACAAAAATGGCGGATTCCTCCCACCAATCAGAATATTCAAGAGTAAATATTGGTGGTGCGGTTGTTAAACGAACAGATCAATAAGATTCGGCATCATCCTTTGTCGCTATGCAGTACCAGGACTTGCTGAAAAAGTAGAAACCGA...

CDS

Download CDS FASTA

2193 bp · TkA04G368370|TK1151|CDS

ATGGCGGCAATACTGGCTTCTAACAGCTGCTATTGCCGTGATGTGCAATTAGTAAATCAAGGACGAACAACAGACAATCTCTCCTTCTCAAGATCAATCTCCATCCAAAAATTAGATCGCCATGAATGTGCTTCCCCAAAAATCTACAAATTCCGTAGATTTCACGTTGAGATGCAGCAGACAGAATCGCCTCTGAAATCCAACACCAACGGTCGACCTGCAAAATTCGACACAAACGGTCAACAAGTGAAATTGGGCGC...

Protein

Download Protein FASTA

730 aa · TkA04G368370|TK1151|PROTEIN

MAAILASNSCYCRDVQLVNQGRTTDNLSFSRSISIQKLDRHECASPKIYKFRRFHVEMQQTESPLKSNTNGRPAKFDTNGQQVKLGANGKPVNFGPNGKPLKLGSNGKPITMVSTTDLLKTKPSSNQIANGSTQLVVKSETKALVKSVKLREPTGFPPSEDLKVLPSDESFSWANENYNSVQRSIDVWSFVLSLRVRVLFDNAKWAYPGGFTEDKQKNRRRKTASWLREQVLQLGPTFIKLGQLSSTRSDLFPREFVDEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G368370`
TK1151 ID	TkA04G368370
OH-1004 ID	LXL04_037968
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 98.516 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G368370

Location Chr04:92614639-92620704 (-)

Description Similar to ABC1K7: Protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g07700`	Involved in resistance to oxidative stress.	Loss of the Atypical Kinases ABC1K7 and ABC1K8 Changes the Lipid Composition of the Chloroplast Membrane.2015 · DOI: 10.1093/pcp/pcv046
`At5g64940`	May participate in responses to oxidative stress, high light and heavy metals.	Loss of the Atypical Kinases ABC1K7 and ABC1K8 Changes the Lipid Composition of the Chloroplast Membrane.2015 · DOI: 10.1093/pcp/pcv046

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037968 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009644 response to high light intensity Biological Process

GO:0010150 leaf senescence Biological Process

GO:0034599 cellular response to oxidative stress Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0046467 membrane lipid biosynthetic process Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:1901031 regulation of response to reactive oxygen species Biological Process

GO:1990641 response to iron ion starvation Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

KEGG gene cross-reference

ath:AT3G07700

ath:AT5G64940

syn:sll0095

syn:sll1770

syn:slr1919

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.986

Rank 1 · TkA04G368370 · TK1151

Mitochondrion0.021

Rank 2 · TkA04G368370 · TK1151

Cell membrane0.012

Rank 3 · TkA04G368370 · TK1151

Cytoplasm0.011

Rank 4 · TkA04G368370 · TK1151

Peroxisome0.010

Rank 5 · TkA04G368370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03109ABC1262-508 aa

PF06176WaaY401-475 aa

PF01636APH442-479 aa

PF27536UbiB_helical546-590 aa

PF02609Exonuc_VII_S636-655 aa

PF30499ABC1_cyano_C664-723 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G368370	`PF03109`	ABC1	262	508	5.7e-89	298.2
TkA04G368370	`PF06176`	WaaY	401	475	0.017	15.5
TkA04G368370	`PF01636`	APH	442	479	0.048	14.1
TkA04G368370	`PF27536`	UbiB_helical	546	590	1.9e-05	24.9
TkA04G368370	`PF02609`	Exonuc_VII_S	636	655	0.28	11.9
TkA04G368370	`PF30499`	ABC1_cyano_C	664	723	0.00038	21.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`B9DGY1`	Arabidopsis thaliana	sp\|B9DGY1\|AB1K7_ARATH Protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic	69.000%	Swiss-Prot	High
`Q93Y08`	Arabidopsis thaliana	sp\|Q93Y08\|AB1K8_ARATH Protein ACTIVITY OF BC1 COMPLEX KINASE 8, chloroplastic	45.400%	Swiss-Prot	Medium

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