Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1983 bp · TkA04G367960|TK1151|cDNA
TTGCACAACAAAACAGTAAAAGAACACCATCCAGAACCAACGCGAAACGCCTACCTCACACCACACACCCGCAGAAACCCAAGGAGGAACTCGAGAAAAAGTCCGATCTTGATTAGGGTTTATAAATCCTGCAACAGTAACACATCTGCTTTGCTCCAGTCTATCTGGGTTTATGATTTGGTTTCATAGAACAACACACAAAACATCAAACTAGGTCGGGGTGAAAAGCGCAATTCTTGAAAAGATGGGGTACCAATGCG...
1221 bp · TkA04G367960|TK1151|CDS
ATGGGGTACCAATGCGACCATTGTGGTGAAGCGAGATCTATGGTGTACTGTAGATCAGATGCGGCCTACTTATGTCTATCATGTGACCGTATAATTCATTCAGCAAATGCTTTATCAAAACGACATTCAAGAACACTTGTATGTGACAGGTGTAATTCACAGCCGGCAGTTGTGAGATGTGTTGAAGAAAAAGTGTCACTTTGTCAAAATTGTGATTGGGCGGGTCATAATAACCGGTCAAATACCACACATAGTAGACA...
Protein
Download Protein FASTA406 aa · TkA04G367960|TK1151|PROTEIN
MGYQCDHCGEARSMVYCRSDAAYLCLSCDRIIHSANALSKRHSRTLVCDRCNSQPAVVRCVEEKVSLCQNCDWAGHNNRSNTTHSRQTLNCYSGCPSAVELSNIWSFMTETPLVIENSCEQGMGSMSIADNSQGPSRSNNNNNNNNNNYIDDDYNNNQDLVVNESNLWRGSSSVRGDDRQENVGQHGGPLNSSTLKISHSGKKDGEACDDDGFYVDFNMDEVDLSIENYEELFGVGHNDPEHLFAKDGIDCLFGGAESNC...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G367960 |
|---|---|
| TK1151 ID | TkA04G367960 |
| OH-1004 ID | LXL04_037954 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 95.300 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G367960 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:92509999-92513974 (-) | ||||||||||||||||||
| Description | Similar to COL9: Zinc finger protein CONSTANS-LIKE 9 | ||||||||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||||||||
| GO annotations (OH1004 source) | GO:0006355 regulation of DNA-templated transcription Biological Process GO:0007623 circadian rhythm Biological Process GO:0010629 negative regulation of gene expression Biological Process GO:0048579 negative regulation of long-day photoperiodism, flowering Biological Process GO:2000032 regulation of secondary shoot formation Biological Process GO:0005634 nucleus Cellular Component GO:0000976 transcription cis-regulatory region binding Molecular Function GO:0003700 DNA-binding transcription factor activity Molecular Function GO:0008270 zinc ion binding Molecular Function | ||||||||||||||||||
| KEGG gene cross-reference | ath:AT3G07650 ath:AT3G21880 ath:AT4G15250 ath:AT5G48250 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF18439zf_UBZ3-10 aaPF00643zf-B_box4-45 aaPF16366CEBP_ZZ4-42 aaPF22586ANCHR-like_BBOX5-42 aaPF18439zf_UBZ23-33 aaPF18439zf_UBZ45-53 aaPF00643zf-B_box46-88 aaPF22586ANCHR-like_BBOX47-84 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G367960 | PF18439 | zf_UBZ | 3 | 10 | 4.0 | 7.9 |
| TkA04G367960 | PF00643 | zf-B_box | 4 | 45 | 1.7e-08 | 35.2 |
| TkA04G367960 | PF16366 | CEBP_ZZ | 4 | 42 | 0.0086 | 17.0 |
| TkA04G367960 | PF22586 | ANCHR-like_BBOX | 5 | 42 | 3.4e-08 | 34.2 |
| TkA04G367960 | PF18439 | zf_UBZ | 23 | 33 | 4.0 | 7.9 |
| TkA04G367960 | PF18439 | zf_UBZ | 45 | 53 | 4.0 | 7.9 |
| TkA04G367960 | PF00643 | zf-B_box | 46 | 88 | 1.7e-08 | 35.2 |
| TkA04G367960 | PF22586 | ANCHR-like_BBOX | 47 | 84 | 3.4e-08 | 34.2 |
| TkA04G367960 | PF16366 | CEBP_ZZ | 47 | 85 | 0.0086 | 17.0 |
| TkA04G367960 | PF06203 | CCT | 349 | 391 | 1.8e-15 | 57.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q9LUA9 | Arabidopsis thaliana | sp|Q9LUA9|COL10_ARATH Zinc finger protein CONSTANS-LIKE 10 | 50.400% | Swiss-Prot | High |
Q9SSE5 | Arabidopsis thaliana | sp|Q9SSE5|COL9_ARATH Zinc finger protein CONSTANS-LIKE 9 | 51.000% | Swiss-Prot | High |
Q9LJ44 | Arabidopsis thaliana | sp|Q9LJ44|COL12_ARATH Zinc finger protein CONSTANS-LIKE 12 | 36.000% | Swiss-Prot | Medium |
O23379 | Arabidopsis thaliana | sp|O23379|COL11_ARATH Putative zinc finger protein CONSTANS-LIKE 11 | 46.200% | Swiss-Prot | Low |
O22800 | Arabidopsis thaliana | sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 | 30.100% | Swiss-Prot | Medium |