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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G359120
Reference: TK1151 Chr: Chr04 Coordinates: 90496670-90506288 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2313 bp · TkA04G359120|TK1151|cDNA

ATGCTACAAAATTGTTCGCTTCAGAATAAATTCCCTGATACCATACTTGCGCTACCAAACTTGAAATTTCTTAATGTGGCTGGTAATACCAACCTCACAGGTTCCTTTCCTGAATTTCGTAACAACAACTCTCTTGAGCATATAGATGTAGATGACACAAATTTCTTTGGAGTTGTACCAGAATCCATAAGCAACCTAAAGCATTTGGTTTACTTAGACCTTAATGAATGCTCTTTCTCAGGGCGCATTCCACGTGCACT...

CDS

Download CDS FASTA

2313 bp · TkA04G359120|TK1151|CDS

ATGCTACAAAATTGTTCGCTTCAGAATAAATTCCCTGATACCATACTTGCGCTACCAAACTTGAAATTTCTTAATGTGGCTGGTAATACCAACCTCACAGGTTCCTTTCCTGAATTTCGTAACAACAACTCTCTTGAGCATATAGATGTAGATGACACAAATTTCTTTGGAGTTGTACCAGAATCCATAAGCAACCTAAAGCATTTGGTTTACTTAGACCTTAATGAATGCTCTTTCTCAGGGCGCATTCCACGTGCACT...

Protein

Download Protein FASTA

770 aa · TkA04G359120|TK1151|PROTEIN

MLQNCSLQNKFPDTILALPNLKFLNVAGNTNLTGSFPEFRNNNSLEHIDVDDTNFFGVVPESISNLKHLVYLDLNECSFSGRIPRALSNLTQITFLGLGSNQFTGFVPSLVSLSKLNNLELSGNKFEPGGLPNWLGELTKLTHLYAYDMDIYGEIPAFLANLTKLQLVSMGRSSLIGHIPSSLFNLTQLGTLDLQKNHMQGPISSSFSAFKNIQHLHLGWNNFTGIVDFNMFLEMNKLETFIVGDNKISLVATTNYTNST...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G359120
TK1151 IDTkA04G359120
OH-1004 IDLXL04_037940
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)91.200
Protein coverage (%)TK1151 95.325 / OH-1004 39.520
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G359120
LocationChr04:90496670-90506288 (-)
DescriptionSimilar to RLP6: Receptor-like protein 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g47890 Receptor-like protein 7. No verified direct reference in this release
At2g33060 Receptor like protein 27. No verified direct reference in this release
At5g40170 Receptor-like protein 54. No verified direct reference in this release
At4g13810 Receptor-like protein 47. No verified direct reference in this release
At3g05660 Receptor-like protein 33. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037940 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G45616
ath:AT1G47890
ath:AT4G13920
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.863
Rank 1 · TkA04G359120 · TK1151
Endoplasmic reticulum0.094
Rank 2 · TkA04G359120 · TK1151
Cytoplasm0.059
Rank 3 · TkA04G359120 · TK1151
Nucleus0.044
Rank 4 · TkA04G359120 · TK1151
Lysosome / Vacuole0.023
Rank 5 · TkA04G359120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13855LRR_82-54 aa
PF00560LRR_12-15 aa
PF23598LRR_142-122 aa
PF12799LRR_42-33 aa
PF25019LRR_R13L1-DRL212-27 aa
PF25019LRR_R13L1-DRL2110-51 aa
PF24048LRR_NXF1-510-30 aa
PF23286LRR_1311-44 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G359120PF13855LRR_82542.2e-34117.7
TkA04G359120PF00560LRR_12152.5e-34110.6
TkA04G359120PF23598LRR_1421224e-2279.2
TkA04G359120PF12799LRR_42338.5e-2174.2
TkA04G359120PF25019LRR_R13L1-DRL212270.001719.0
TkA04G359120PF25019LRR_R13L1-DRL2110510.001719.0
TkA04G359120PF24048LRR_NXF1-510300.002718.0
TkA04G359120PF23286LRR_1311440.0003721.0
TkA04G359120PF12799LRR_419548.5e-2174.2
TkA04G359120PF13516LRR_619320.05414.3
TkA04G359120PF00560LRR_120412.5e-34110.6
TkA04G359120PF25019LRR_R13L1-DRL2140980.001719.0
TkA04G359120PF13516LRR_641540.05414.3
TkA04G359120PF13855LRR_8441032.2e-34117.7
TkA04G359120PF00560LRR_144662.5e-34110.6
TkA04G359120PF23286LRR_1350860.0003721.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C699Arabidopsis thalianasp|Q9C699|RLP7_ARATH Receptor-like protein 745.100%Swiss-ProtMedium
F4IUU1Arabidopsis thalianasp|F4IUU1|RLP27_ARATH Receptor like protein 2738.100%Swiss-ProtMedium
F4KHA2Arabidopsis thalianasp|F4KHA2|RLP54_ARATH Receptor-like protein 5440.500%Swiss-ProtMedium
Q9SVN2Arabidopsis thalianasp|Q9SVN2|RLP47_ARATH Receptor-like protein 4738.500%Swiss-ProtMedium
F4J8G2Arabidopsis thalianasp|F4J8G2|RLP33_ARATH Receptor-like protein 3337.600%Swiss-ProtMedium

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