TkA04G345810 | RubberDandelionOmics

Gene overview

TkA04G345810

Reference: TK1151 Chr: Chr04 Coordinates: 87416041-87418629 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

864 bp · TkA04G345810|TK1151|cDNA

ATGCTTTGGGTGGAGTTGGAGGCTGTGGATGCTTTTCTGGATGCTATGGATAAAGCAATAAAAGCCAAAGTTGCTAAAGTTGTTGTTCCTGCCATAGATGTCATGTTTCAAGCCTTGAGTGAATTTGGTTCAAAGATTGTACCACCAAAGAGAATACTGAAGATGCTTCCGGAACTCTTTGATCATCAAGATAAAATTTTCGAAGTTGCCACTGAGCCTGCGGGTTCTGGCCCTTCTGAAGAATCCACAGCCGAGGTTTC...

CDS

Download CDS FASTA

864 bp · TkA04G345810|TK1151|CDS

ATGCTTTGGGTGGAGTTGGAGGCTGTGGATGCTTTTCTGGATGCTATGGATAAAGCAATAAAAGCCAAAGTTGCTAAAGTTGTTGTTCCTGCCATAGATGTCATGTTTCAAGCCTTGAGTGAATTTGGTTCAAAGATTGTACCACCAAAGAGAATACTGAAGATGCTTCCGGAACTCTTTGATCATCAAGATAAAATTTTCGAAGTTGCCACTGAGCCTGCGGGTTCTGGCCCTTCTGAAGAATCCACAGCCGAGGTTTC...

Protein

Download Protein FASTA

287 aa · TkA04G345810|TK1151|PROTEIN

MLWVELEAVDAFLDAMDKAIKAKVAKVVVPAIDVMFQALSEFGSKIVPPKRILKMLPELFDHQDKIFEVATEPAGSGPSEESTAEVSNEIDEYKLVDPVDIRTPLEKTVFWNGVKATKWSERRDVAELTKLASTKRIAPGDISEECHTLKKLIIDSSLAIAVEAVQVLGNLAADVKSDVKNKVPLVRFTDIELGNILHLHCLNDGTPKVRNVTFSVLAAIAKMVGMRPLEKSLEKLNDLDDVRQKKALINDWYFWRWCSS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G345810`
TK1151 ID	TkA04G345810
OH-1004 ID	LXL04_028473
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	80.100
Protein coverage (%)	TK1151 100.000 / OH-1004 94.278 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G345810

Location Chr04:87416041-87418629 (-)

Description Similar to MOR1: Protein MOR1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g35630`	Microtubule-binding protein that is essential for cortical microtubules organization and function.	MOR1 is essential for organizing cortical microtubules in plants.2001 · DOI: 10.1038/35079128 Mutation or drug-dependent microtubule disruption causes radial swelling without altering parallel cellulose microfibril deposition in Arabidopsis root cells.2003 · DOI: 10.1105/tpc.011593 Genetic analysis of adventitious root formation with a novel series of temperature-sensitive mutants of Arabidopsis thaliana.2003 · DOI: 10.1242/dev.00794 Cellulose microfibril alignment recovers from DCB-induced disruption despite microtubule disorganization.2003 · DOI: 10.1046/j.1365-313x.2003.01906.x Aberrant cell plate formation in the Arabidopsis thaliana microtubule organization 1 mutant.2005 · DOI: 10.1093/pcp/pci068 MICROTUBULE ORGANIZATION 1 regulates structure and function of microtubule arrays during mitosis and cytokinesis in the Arabidopsis root.2006 · DOI: 10.1104/pp.105.069989 Hypersensitivity to cytoskeletal antagonists demonstrates microtubule-microfilament cross-talk in the control of root elongation in Arabidopsis thaliana.2006 · DOI: 10.1111/j.1469-8137.2006.01671.x MOR1, the Arabidopsis thaliana homologue of Xenopus MAP215, promotes rapid growth and shrinkage, and suppresses the pausing of microtubules in vivo.2008 · DOI: 10.1242/jcs.039065

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0816400`	Microtubule-associated protein that is essential for cortical microtubules organization and function.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028473 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000226 microtubule cytoskeleton organization Biological Process

GO:0000281 mitotic cytokinesis Biological Process

GO:0000911 cytokinesis by cell plate formation Biological Process

GO:0007020 microtubule nucleation Biological Process

GO:0007030 Golgi organization Biological Process

GO:0007052 mitotic spindle organization Biological Process

GO:0009920 cell plate formation involved in plant-type cell wall biogenesis Biological Process

GO:0030951 establishment or maintenance of microtubule cytoskeleton polarity Biological Process

GO:0046785 microtubule polymerization Biological Process

GO:0051298 centrosome duplication Biological Process

GO:0051301 cell division Biological Process

GO:0000776 kinetochore Cellular Component

KEGG gene cross-reference

ath:AT2G35630

ddi:DDB_G0268616

dosa:Os01g0816400

xla:779014

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.654

Rank 1 · TkA04G345810 · TK1151

Nucleus0.302

Rank 2 · TkA04G345810 · TK1151

Endoplasmic reticulum0.065

Rank 3 · TkA04G345810 · TK1151

Mitochondrion0.058

Rank 4 · TkA04G345810 · TK1151

Cell membrane0.051

Rank 5 · TkA04G345810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21041XMAP215_CLASP_TOG1-65 aa

PF21041XMAP215_CLASP_TOG142-224 aa

PF02985HEAT149-173 aa

PF02985HEAT199-222 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G345810	`PF21041`	XMAP215_CLASP_TOG	1	65	2e-13	51.4
TkA04G345810	`PF21041`	XMAP215_CLASP_TOG	142	224	2e-13	51.4
TkA04G345810	`PF02985`	HEAT	149	173	0.013	16.4
TkA04G345810	`PF02985`	HEAT	199	222	0.013	16.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94FN2`	Arabidopsis thaliana	sp\|Q94FN2\|MOR1_ARATH Protein MOR1	47.500%	Swiss-Prot	Medium
`Q5N749`	Oryza sativa subsp. japonica	sp\|Q5N749\|MOR1_ORYSJ Protein MOR1	46.700%	Swiss-Prot	Medium

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