TkA04G342120 | RubberDandelionOmics

Gene overview

TkA04G342120

Reference: TK1151 Chr: Chr04 Coordinates: 86378595-86380991 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

789 bp · TkA04G342120|TK1151|cDNA

ATGGGCACAACGAACCGCTTACAAGACACTTATTGGCATGTCACCATATCACATTGTTTTGGCAAGCCATGTAGACTCCCGGTGGAATTGGAGCACAAGGCTTATTGGGCTATTAAACGTGTCAACATGGATTTGCAAGGAGCGGGGAAGAAGCGGAAGTTGGATCTCCAAGAGTTGGAAGAGTTGAGGAATGAAGCATATGAGAATGAAATGATCTACAAAAGAGAAAACGAAAGCCTATCACGACAAAAAGATTTCTC...

CDS

Download CDS FASTA

789 bp · TkA04G342120|TK1151|CDS

ATGGGCACAACGAACCGCTTACAAGACACTTATTGGCATGTCACCATATCACATTGTTTTGGCAAGCCATGTAGACTCCCGGTGGAATTGGAGCACAAGGCTTATTGGGCTATTAAACGTGTCAACATGGATTTGCAAGGAGCGGGGAAGAAGCGGAAGTTGGATCTCCAAGAGTTGGAAGAGTTGAGGAATGAAGCATATGAGAATGAAATGATCTACAAAAGAGAAAACGAAAGCCTATCACGACAAAAAGATTTCTC...

Protein

Download Protein FASTA

262 aa · TkA04G342120|TK1151|PROTEIN

MGTTNRLQDTYWHVTISHCFGKPCRLPVELEHKAYWAIKRVNMDLQGAGKKRKLDLQELEELRNEAYENEMIYKRENESLSRQKDFSKGKLGEVAEASTTRLHKHSSSFGKFFPIYPFENPRSRGASSPSRPIDLQPCFPVFRRPPSRLHLAVAKPPLPAASSFACAAHRWPSRAVTASFFFLLSGDSPTSGVDLLLPSCSRNLRPKHPSSGSLVVCFREELHRQFSLLPIFFCRCQRPILLPVSFLLLPGSARCIGTYK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G342120`
TK1151 ID	TkA04G342120
OH-1004 ID	LXL04_038136
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	50.000
Protein coverage (%)	TK1151 26.336 / OH-1004 3.980 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA04G342120`
Location	Chr04:86378595-86380991 (-)
Description	Similar to TY3B-G: Transposon Ty3-G Gag-Pol polyprotein (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_038136` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006281 DNA repair Biological Process GO:0006310 DNA recombination Biological Process GO:0006313 DNA transposition Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0075523 viral translational frameshifting Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0042575 DNA polymerase complex Cellular Component GO:0003676 nucleic acid binding Molecular Function GO:0003677 DNA binding Molecular Function GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference	sce:YGR109W-B sce:YIL082W-A These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.531

Rank 1 · TkA04G342120 · TK1151

Cytoplasm0.365

Rank 2 · TkA04G342120 · TK1151

Cell membrane0.126

Rank 3 · TkA04G342120 · TK1151

Endoplasmic reticulum0.091

Rank 4 · TkA04G342120 · TK1151

Mitochondrion0.043

Rank 5 · TkA04G342120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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