TkA04G314620 | RubberDandelionOmics

Gene overview

TkA04G314620

Reference: TK1151 Chr: Chr04 Coordinates: 79293625-79296690 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1274 bp · TkA04G314620|TK1151|cDNA

CTCCGCTCTTCTTCGGAAGTAAGAAGAGGATAGTCGAATGCTTCATTGAGTAAACAATGGATGAGTTTTTCAGGAAGCTAAAAAGACCTTTCAACGCTAGTTGGGATGCTGTGGAGTCTGACATGGCAGTCTTCGAGCGCATACTCTTCAGGCTTCCAGTCAAAAGCATACTGATATTCAAATCAGTTTCAAAGATCTGGAAAAGTATAATATCCACAATGCATTTCATGCTATTGCATTATTTTTGGTCCAAAAAGAAC...

CDS

Download CDS FASTA

1155 bp · TkA04G314620|TK1151|CDS

ATGGATGAGTTTTTCAGGAAGCTAAAAAGACCTTTCAACGCTAGTTGGGATGCTGTGGAGTCTGACATGGCAGTCTTCGAGCGCATACTCTTCAGGCTTCCAGTCAAAAGCATACTGATATTCAAATCAGTTTCAAAGATCTGGAAAAGTATAATATCCACAATGCATTTCATGCTATTGCATTATTTTTGGTCCAAAAAGAACGCCAAATTCTTCGCCTTTCATAATCCCAATGACCTCGAAAACAATAAATTCTGTGA...

Protein

Download Protein FASTA

384 aa · TkA04G314620|TK1151|PROTEIN

MDEFFRKLKRPFNASWDAVESDMAVFERILFRLPVKSILIFKSVSKIWKSIISTMHFMLLHYFWSKKNAKFFAFHNPNDLENNKFCEMHLVESNGAYSESYTIPVFKTLEDIHLVASFNGLICFINDVTRYEKTYNVDIHICNPATHEVLVLPPSHPSFDVPTFGVLYSNKTHIYKIFKFFSDPDDPETGYCEVYSSKTEKWKLFVDVPSRTLMGPTRSWISNASHICIHEKVYWFISDEHDDEIYFPTSILMVDMEDNF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G314620`
TK1151 ID	TkA04G314620
OH-1004 ID	LXL04_037509
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 86.682 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G314620

Location Chr04:79293625-79296690 (+)

Description Similar to FBX15: Putative F-box only protein 15

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g30790`	F-box protein At1g30790.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037509 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT3G23880

ath:AT4G04690

ath:AT5G49610

ath:AT5G65850

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.569

Rank 1 · TkA04G314620 · TK1151

Nucleus0.390

Rank 2 · TkA04G314620 · TK1151

Cell membrane0.122

Rank 3 · TkA04G314620 · TK1151

Endoplasmic reticulum0.080

Rank 4 · TkA04G314620 · TK1151

Lysosome / Vacuole0.052

Rank 5 · TkA04G314620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box26-57 aa

PF08268FBA_365-349 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G314620	`PF00646`	F-box	26	57	2.6e-05	24.7
TkA04G314620	`PF08268`	FBA_3	65	349	1.7e-10	41.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SY20`	Arabidopsis thaliana	sp\|Q9SY20\|FB20_ARATH F-box protein At1g30790	35.100%	Swiss-Prot	Low

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