TkA04G269890 | RubberDandelionOmics

Gene overview

TkA04G269890

Reference: TK1151 Chr: Chr04 Coordinates: 68186973-68188855 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1648 bp · TkA04G269890|TK1151|cDNA

TTAATGGAAACATTGTATACTCCTAAATTTCATGCTTCTTTTCAAATTATTCTCTTATATATACTCTGTCTGCCCCACTCCATTAAAGCAACAGAATCAGCTTCCACTTCATCGAAGCAAAGAACCAGCTTCCCGTCTAACTTATCATCGCCGACGGCCATGGACTCCCAGAGGGTCGGTCTTATAGCAAAACGAAAAGACATATCTCGGACGAAATCCAGCGCTCGCGACGAATTACACAGCTTCCGGTCATGGCTCCG...

CDS

Download CDS FASTA

1461 bp · TkA04G269890|TK1151|CDS

ATGGAAACATTGTATACTCCTAAATTTCATGCTTCTTTTCAAATTATTCTCTTATATATACTCTGTCTGCCCCACTCCATTAAAGCAACAGAATCAGCTTCCACTTCATCGAAGCAAAGAACCAGCTTCCCGTCTAACTTATCATCGCCGACGGCCATGGACTCCCAGAGGGTCGGTCTTATAGCAAAACGAAAAGACATATCTCGGACGAAATCCAGCGCTCGCGACGAATTACACAGCTTCCGGTCATGGCTCCGGTG...

Protein

Download Protein FASTA

486 aa · TkA04G269890|TK1151|PROTEIN

METLYTPKFHASFQIILLYILCLPHSIKATESASTSSKQRTSFPSNLSSPTAMDSQRVGLIAKRKDISRTKSSARDELHSFRSWLRWMCVDQSNAWTFSLSWLVFIVFTIVIPILSHFYLACSDCDNRHARPYDSLVQLSLSSIATLSFVSLSQFVRVYGLRRFLFFDKLCNESEIVRRGYTEQLNSSLKIVFIFVAPCFMAEAAYKIWWYTSGATAIPFLGNAIVSDAVACTLELCSWLYRTVVFFLVCVLFRLICHLQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G269890`
TK1151 ID	TkA04G269890
OH-1004 ID	LXL04_037296
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA04G269890`
Location	Chr04:68186973-68188855 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_037296` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.363

Rank 1 · TkA04G269890 · TK1151

Lysosome / Vacuole0.286

Rank 2 · TkA04G269890 · TK1151

Endoplasmic reticulum0.200

Rank 3 · TkA04G269890 · TK1151

Cytoplasm0.126

Rank 4 · TkA04G269890 · TK1151

Golgi apparatus0.112

Rank 5 · TkA04G269890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12056DUF353776-470 aa

PF13789DUF418179-111 aa

PF29122SMIM40200-218 aa

PF13789DUF4181226-226 aa

PF29122SMIM40246-249 aa

PF29122SMIM40300-310 aa

PF13789DUF4181315-315 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G269890	`PF12056`	DUF3537	76	470	1.8e-168	561.1
TkA04G269890	`PF13789`	DUF4181	79	111	0.33	12.1
TkA04G269890	`PF29122`	SMIM40	200	218	0.0068	17.0
TkA04G269890	`PF13789`	DUF4181	226	226	0.33	12.1
TkA04G269890	`PF29122`	SMIM40	246	249	0.0068	17.0
TkA04G269890	`PF29122`	SMIM40	300	310	0.0068	17.0
TkA04G269890	`PF13789`	DUF4181	315	315	0.33	12.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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