TkA04G264100 | RubberDandelionOmics

Gene overview

TkA04G264100

Reference: TK1151 Chr: Chr04 Coordinates: 66808850-66812885 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1715 bp · TkA04G264100|TK1151|cDNA

GTCAATGGTTGATCAAGAAGGATCATGGCCTAGGGTGACGACCTCCATTGCACTCAGGAGGGGCGTTAGCCTAAGGTCGGCCCAAGTGGTCGAGCCTACGTCATAATTTGTGCGAGTGGGGGCTTGCGTTCGCGCAGCCCCCGTCAATTCTCTAGTCAATCTTTCAGTTTTTAGTTCTTTTTCACATATTTGTTTAATTAAGCTACACAACACTGTTCTTTAAGCTAATGGCAAGATATGAAGATGGGGATTCCTCCAAC...

CDS

Download CDS FASTA

1371 bp · TkA04G264100|TK1151|CDS

ATGGCAAGATATGAAGATGGGGATTCCTCCAACAGCGATACACCGTTGTTGCTGTCAACTTCCGTTAAGTTAACCGGCAATCAATGGACAGCTATTGCACATATAATAACCGCAGTAGTAGGATCAGGAGTTTTATCACTATCTTGGAGTGTATCACAACTCGGATGGGTTGCGGGTCCACTATCCCTCATTCTATTTGCAATTGTCACTTTCATTAATGCATCTCTTCTCACCAACTTCCATCATCATTCAAACCCTCT...

Protein

Download Protein FASTA

456 aa · TkA04G264100|TK1151|PROTEIN

MARYEDGDSSNSDTPLLLSTSVKLTGNQWTAIAHIITAVVGSGVLSLSWSVSQLGWVAGPLSLILFAIVTFINASLLTNFHHHSNPLNGQTITNRSYLQAVQNILGDPSARVCAWLVYFNLFKLGVVYTITSAISIRAIKQSNCYHHQGHEAACEYALTSYMFLFGIIQIIASQIPNFHSTKWLSITAAVTSFMYSLIGSGLGLAKTLGNGKIEGSIGGVPTDKPIQKVWLVAQAIGDIAFAYPFHLVFFEIMSTLKSHP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G264100`
TK1151 ID	TkA04G264100
OH-1004 ID	LXL04_037248
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 51.584 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G264100

Location Chr04:66808850-66812885 (-)

Description Similar to AAP7: Probable amino acid permease 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g23810`	Amino acid-proton symporter.	No verified direct reference in this release
`At1g77380`	Amino acid-proton symporter.	Substrate specificity and expression profile of amino acid transporters (AAPs) in Arabidopsis.1995 · DOI: 10.1074/jbc.270.27.16315
`At5g09220`	Amino acid-proton symporter.	Substrate specificity and expression profile of amino acid transporters (AAPs) in Arabidopsis.1995 · DOI: 10.1074/jbc.270.27.16315 Differential expression of two related amino acid transporters with differing substrate specificity in Arabidopsis thaliana.1993 · DOI: 10.1046/j.1365-313x.1993.04060993.x
`At5g63850`	Amino acid-proton symporter.	Substrate specificity and expression profile of amino acid transporters (AAPs) in Arabidopsis.1995 · DOI: 10.1074/jbc.270.27.16315
`At5g49630`	Amino acid-proton symporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037248 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0003333 amino acid transmembrane transport Biological Process

GO:0006865 amino acid transport Biological Process

GO:0006952 defense response Biological Process

GO:0015800 acidic amino acid transport Biological Process

GO:0015802 basic amino acid transport Biological Process

GO:0015804 neutral amino acid transport Biological Process

GO:0110126 phloem loading Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0031965 nuclear membrane Cellular Component

GO:0015171 amino acid transmembrane transporter activity Molecular Function

GO:0015174 basic amino acid transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G77380

ath:AT5G09220

ath:AT5G23810

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.404

Rank 1 · TkA04G264100 · TK1151

Lysosome / Vacuole0.337

Rank 2 · TkA04G264100 · TK1151

Endoplasmic reticulum0.144

Rank 3 · TkA04G264100 · TK1151

Cytoplasm0.104

Rank 4 · TkA04G264100 · TK1151

Golgi apparatus0.076

Rank 5 · TkA04G264100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01490Aa_trans26-451 aa

PF23695YncO114-151 aa

PF23695YncO160-171 aa

PF23695YncO419-433 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G264100	`PF01490`	Aa_trans	26	451	1.5e-90	304.5
TkA04G264100	`PF23695`	YncO	114	151	0.13	12.9
TkA04G264100	`PF23695`	YncO	160	171	0.13	12.9
TkA04G264100	`PF23695`	YncO	419	433	0.13	12.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FF99`	Arabidopsis thaliana	sp\|Q9FF99\|AAP7_ARATH Probable amino acid permease 7	52.300%	Swiss-Prot	High
`Q39134`	Arabidopsis thaliana	sp\|Q39134\|AAP3_ARATH Amino acid permease 3	48.700%	Swiss-Prot	Medium
`Q38967`	Arabidopsis thaliana	sp\|Q38967\|AAP2_ARATH Amino acid permease 2	45.100%	Swiss-Prot	Medium
`Q9FN04`	Arabidopsis thaliana	sp\|Q9FN04\|AAP4_ARATH Amino acid permease 4	44.900%	Swiss-Prot	Medium
`P92934`	Arabidopsis thaliana	sp\|P92934\|AAP6_ARATH Amino acid permease 6	46.900%	Swiss-Prot	Medium

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