TkA04G261870 | RubberDandelionOmics

Gene overview

TkA04G261870

Reference: TK1151 Chr: Chr04 Coordinates: 66208611-66211789 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2232 bp · TkA04G261870|TK1151|cDNA

TCTTCTATTAATGAGTCTCCGTCTCCCATTTGAAACGGGAGACCCATTCAAATTCCCATTGACTATTTTCTCTTCTGGTTCACTCTTCAATCCCCATATCTCGGTCTTCCATTAAAGATCTCAAAAGATAGCAGAGGACCCATTCTGTGAAGAAACCAATATGGGGGATTTGTTGCTAATTTCTATATCCAATAGTTCATCACACCTTCATTATGATCCGACTCTTTAATCCATGAAACCCTAAGGAGCCGTCAGCCACT...

CDS

Download CDS FASTA

492 bp · TkA04G261870|TK1151|CDS

ATGACCAAACACTCTAAACTACTAACAGCAGTATCCAACATTTACAGGAAGCTACAGGAGTATGAAAGCATGGCTTCCGAAACATTAGTCTATGTGAAGAATACAACTCAGGCACAACATATTAATGGACTACCTACGGGTTTGGAAGAGAGACTAGATAGAGTACATCAGATGTATTCAAAAGTTCCATGCTACAACAATAACTACGAGTTAGATTTCAGAAACAAGCGAAAATCGGGACTTAAAATCAAGAGTTCTGT...

Protein

Download Protein FASTA

163 aa · TkA04G261870|TK1151|PROTEIN

MTKHSKLLTAVSNIYRKLQEYESMASETLVYVKNTTQAQHINGLPTGLEERLDRVHQMYSKVPCYNNNYELDFRNKRKSGLKIKSSVKKIWIKLYKLSKYMMDYRSPLTGYQDFYASTDKCIYQMFIIIWNNMMSRYQSRLDLKGTTISLPLFIIFVCVWLYN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G261870`
TK1151 ID	TkA04G261870
OH-1004 ID	LXL04_009244
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	54.000
Protein coverage (%)	TK1151 69.939 / OH-1004 34.860 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G261870

Location Chr04:66208611-66211789 (-)

Description Similar to TULP8: Tubby-like protein 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0179400`	Tubby-like protein 4.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009244 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007186 G protein-coupled receptor signaling pathway Biological Process

GO:0008277 regulation of G protein-coupled receptor signaling pathway Biological Process

GO:0009620 response to fungus Biological Process

GO:0045879 negative regulation of smoothened signaling pathway Biological Process

GO:0061512 protein localization to cilium Biological Process

GO:0097499 protein localization to non-motile cilium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G16070

cqu:CpipJ_CPIJ006491

cqu:CpipJ_CPIJ017614

hsa:7289

osa:107276884

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.351

Rank 1 · TkA04G261870 · TK1151

Cytoplasm0.259

Rank 2 · TkA04G261870 · TK1151

Nucleus0.235

Rank 3 · TkA04G261870 · TK1151

Endoplasmic reticulum0.137

Rank 4 · TkA04G261870 · TK1151

Cell membrane0.095

Rank 5 · TkA04G261870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15934Yuri_gagarin7-89 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G261870	`PF15934`	Yuri_gagarin	7	89	0.041	14.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6ETL2`	Oryza sativa subsp. japonica	sp\|Q6ETL2\|TLP4_ORYSJ Tubby-like protein 4	33.600%	Swiss-Prot	Medium

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