TkA04G260340 | RubberDandelionOmics

Gene overview

TkA04G260340

Reference: TK1151 Chr: Chr04 Coordinates: 65827628-65830796 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1914 bp · TkA04G260340|TK1151|cDNA

AAAGCTCAAATCTTGAAAATCAATCCCACTCGTTGACTTTATATCTAAAAGGCAAACTCGTTTCAATTTATGACCCTTTTGTGTTCATACGCCGTACTCCATACTAGCGAAGAATCAGCTCATTCCAGGAAAGAAGAAAGGAAGAAATCACGATCCATCGCATTACTTAGCTGACTTCGTACACTTTCATTAATATACACCAAAGGGGGCACACAATCGACACTACAATTGCGCCCAATTACCTACTTAAACCTAATCGT...

CDS

Download CDS FASTA

1197 bp · TkA04G260340|TK1151|CDS

ATGGGTTGTTTCTCTTTCTTCTTTCGCCGGGGAGCAAACCCACCGACTACACGGTTTGCTGAATTCGAAGATGAATTATCCGAAGTTCAGAATCTTAAGCTTTACTCCTACAAGGAACTAAAATGCGCCACCGATGATTTCAGTCCGGCCAACAAGATTGGCGAGGGTGGATTTGGTCCCGTTTACAGGGGAAAGCTTCGACATGGTAAAGACGCAGCTATAAAGGTTCTTTCTGCTGATTCGAAACAAGGCGCGAAAGA...

Protein

Download Protein FASTA

398 aa · TkA04G260340|TK1151|PROTEIN

MGCFSFFFRRGANPPTTRFAEFEDELSEVQNLKLYSYKELKCATDDFSPANKIGEGGFGPVYRGKLRHGKDAAIKVLSADSKQGAKEFLTEIKVICDIEHENLAKLCGCCVEGDHRILVYDYLENNSLAQTLLGNGHSNIRFSWRTRTRICIGIARGLAFLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIRGQLTRRADVYSFGVLLVEIVSGRSNTNSLLPIEEKFI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G260340`
TK1151 ID	TkA04G260340
OH-1004 ID	LXL04_037215
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G260340

Location Chr04:65827628-65830796 (-)

Description Similar to CRPK1: Cold-responsive protein kinase 1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g16670`	Negative regulator of freezing tolerance that phosphorylates 14-3-3 proteins (e.g. GRF6) thus triggering their translocation from the cytosol to the nucleus in response to cold stress.	No verified direct reference in this release
`At1g56140`	Probable LRR receptor-like serine/threonine-protein kinase At1g56140.	No verified direct reference in this release
`At1g56130`	Probable LRR receptor-like serine/threonine-protein kinase At1g56130.	No verified direct reference in this release
`At3g14840`	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840.	No verified direct reference in this release
`At1g53430`	Probable LRR receptor-like serine/threonine-protein kinase At1g53430.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037215 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002237 response to molecule of bacterial origin Biological Process

GO:0009409 response to cold Biological Process

GO:0009625 response to insect Biological Process

GO:0009861 jasmonic acid and ethylene-dependent systemic resistance Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0050826 response to freezing Biological Process

GO:0052542 defense response by callose deposition Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G16670

ath:AT1G53430

ath:AT1G56130

ath:AT1G56140

ath:AT3G14840

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.635

Rank 1 · TkA04G260340 · TK1151

Cytoplasm0.290

Rank 2 · TkA04G260340 · TK1151

Nucleus0.215

Rank 3 · TkA04G260340 · TK1151

Endoplasmic reticulum0.039

Rank 4 · TkA04G260340 · TK1151

Golgi apparatus0.034

Rank 5 · TkA04G260340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12330Haspin_kinase35-198 aa

PF00069Pkinase50-249 aa

PF07714PK_Tyr_Ser-Thr51-276 aa

PF03109ABC153-97 aa

PF10707YrbL-PhoP_reg67-95 aa

PF03109ABC1159-200 aa

PF01636APH159-197 aa

PF10707YrbL-PhoP_reg166-201 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G260340	`PF12330`	Haspin_kinase	35	198	0.023	14.4
TkA04G260340	`PF00069`	Pkinase	50	249	1.7e-42	146.4
TkA04G260340	`PF07714`	PK_Tyr_Ser-Thr	51	276	5.1e-45	154.5
TkA04G260340	`PF03109`	ABC1	53	97	0.00013	21.9
TkA04G260340	`PF10707`	YrbL-PhoP_reg	67	95	0.18	12.2
TkA04G260340	`PF03109`	ABC1	159	200	0.00013	21.9
TkA04G260340	`PF01636`	APH	159	197	0.28	11.6
TkA04G260340	`PF10707`	YrbL-PhoP_reg	166	201	0.18	12.2
TkA04G260340	`PF17667`	Pkinase_fungal	168	235	0.19	11.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93YN1`	Arabidopsis thaliana	sp\|Q93YN1\|CRPK1_ARATH Cold-responsive protein kinase 1	66.000%	Swiss-Prot	High
`C0LGH3`	Arabidopsis thaliana	sp\|C0LGH3\|Y5614_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g56140	53.600%	Swiss-Prot	High
`C0LGH2`	Arabidopsis thaliana	sp\|C0LGH2\|Y1561_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g56130	55.000%	Swiss-Prot	High
`C0LGN2`	Arabidopsis thaliana	sp\|C0LGN2\|Y3148_ARATH Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	53.500%	Swiss-Prot	High
`C0LGG8`	Arabidopsis thaliana	sp\|C0LGG8\|Y5343_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53430	55.400%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card