TkA04G230740 | RubberDandelionOmics

Gene overview

TkA04G230740

Reference: TK1151 Chr: Chr04 Coordinates: 58609514-58612932 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1428 bp · TkA04G230740|TK1151|cDNA

TTACAACCCATTTTCCCCTTCAAATCCTCCATCTTCTTTCTGCAACTCCAAAATTCCTCCATTTGGATCCATTCATTCATCAACCCCCAGCTCTGATCTGTAACCCTTCTGTTATTATTCTGATTCTTAGCCATGAATAGTAATCCAGCTACGCCGATGAACGCACACGCTCCGTCATCAAGCTCCGGTGGTGCTGGATCCCCTGATTCATCTGCTGCAAGGAGAAATTCCAAGCGACCTAAATATTCCAGGTTTACTCA...

CDS

Download CDS FASTA

1080 bp · TkA04G230740|TK1151|CDS

ATGAATAGTAATCCAGCTACGCCGATGAACGCACACGCTCCGTCATCAAGCTCCGGTGGTGCTGGATCCCCTGATTCATCTGCTGCAAGGAGAAATTCCAAGCGACCTAAATATTCCAGGTTTACTCAACAAGAACTTCCAGCTTGCAAGCCAATTCTCACTCCAAAATGGGTGATTTCAGCATTCATGCTTGTAACCATAGTCTTCATACCAATCGGACTTGCTTCCCTCTTCGCCTCTCGTGACGTAGTTGAAATTAT...

Protein

Download Protein FASTA

359 aa · TkA04G230740|TK1151|PROTEIN

MNSNPATPMNAHAPSSSSGGAGSPDSSAARRNSKRPKYSRFTQQELPACKPILTPKWVISAFMLVTIVFIPIGLASLFASRDVVEIIDRYDNACAPPGSSKSQKVEFIQSNLNKTCVRTLTVTKRMKQPIYVYYQLDNFYQNHRRYVKSRSDQQLRNRGDENDTSTCKPEHNANGMPIVPCGLVAWSLFNDTYAFSSSNNPQLNVNKRHISWKSDREDKFGSDVFPKNFQNGNIIGGARLNESIPLSEQEDLIVWMRTAA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G230740`
TK1151 ID	TkA04G230740
OH-1004 ID	LXL04_039345
Relationship / confidence	Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)	99.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G230740

Location Chr04:58609514-58612932 (+)

Description Similar to ALIS1: ALA-interacting subunit 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g54320`	Required for the lipid transport activity of the ALA/ALIS P4-ATPase complex.	No verified direct reference in this release
`At3g12740`	Required for the lipid transport activity of the ALA/ALIS P4- ATPase complex.	The Arabidopsis P4-ATPase ALA3 localizes to the golgi and requires a beta-subunit to function in lipid translocation and secretory vesicle formation.2008 · DOI: 10.1105/tpc.107.054767
`At1g79450`	Required for the lipid transport activity of the ALA/ALIS P4-ATPase complex.	No verified direct reference in this release
`At1g16360`	Putative ALA-interacting subunit 4.	No verified direct reference in this release
`At5g46150`	Putative ALA-interacting subunit 2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039345 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015914 phospholipid transport Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G16360

ath:AT1G54320

ath:AT1G79450

ath:AT3G12740

ath:AT5G46150

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.383

Rank 1 · TkA04G230740 · TK1151

Cytoplasm0.331

Rank 2 · TkA04G230740 · TK1151

Golgi apparatus0.257

Rank 3 · TkA04G230740 · TK1151

Lysosome / Vacuole0.252

Rank 4 · TkA04G230740 · TK1151

Endoplasmic reticulum0.125

Rank 5 · TkA04G230740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26592PrgI_like52-77 aa

PF03381CDC5077-342 aa

PF29780CfpA_N105-154 aa

PF29780CfpA_N282-295 aa

PF26592PrgI_like308-350 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G230740	`PF26592`	PrgI_like	52	77	8.4	7.6
TkA04G230740	`PF03381`	CDC50	77	342	5.6e-92	309.0
TkA04G230740	`PF29780`	CfpA_N	105	154	0.051	14.9
TkA04G230740	`PF29780`	CfpA_N	282	295	0.051	14.9
TkA04G230740	`PF26592`	PrgI_like	308	350	8.4	7.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SLK2`	Arabidopsis thaliana	sp\|Q9SLK2\|ALIS3_ARATH ALA-interacting subunit 3	72.300%	Swiss-Prot	High
`Q9LTW0`	Arabidopsis thaliana	sp\|Q9LTW0\|ALIS1_ARATH ALA-interacting subunit 1	73.300%	Swiss-Prot	High
`Q8L8W0`	Arabidopsis thaliana	sp\|Q8L8W0\|ALIS5_ARATH ALA-interacting subunit 5	68.300%	Swiss-Prot	High
`Q9SA35`	Arabidopsis thaliana	sp\|Q9SA35\|ALIS4_ARATH Putative ALA-interacting subunit 4	69.400%	Swiss-Prot	High
`Q67YS6`	Arabidopsis thaliana	sp\|Q67YS6\|ALIS2_ARATH Putative ALA-interacting subunit 2	56.500%	Swiss-Prot	High

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