TkA04G205570 | RubberDandelionOmics

Gene overview

TkA04G205570

Reference: TK1151 Chr: Chr04 Coordinates: 52786989-52789971 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2049 bp · TkA04G205570|TK1151|cDNA

GGCTATAAGTAATGGCTAACATAGGCCAGAGAAACCATTACTAAAGGTGCAAAATGAAACCATCCAACTCTACAATAGTATTTCTTGCATATTGTTTTCTATTGGTTGGGATAGTTGCAGGAAAAAGAAGTGCTTTGGATACAAGTGCAGGCGACGCAGAAACCATTGCCCACCACTATCAAACAGTCAAACTAAGCTCTTTCCTATCATCTTCAATATGTAGTCCTTCAAGTAAACGTGACAAGAAAAGCATATCATTT...

CDS

Download CDS FASTA

1458 bp · TkA04G205570|TK1151|CDS

ATGAAACCATCCAACTCTACAATAGTATTTCTTGCATATTGTTTTCTATTGGTTGGGATAGTTGCAGGAAAAAGAAGTGCTTTGGATACAAGTGCAGGCGACGCAGAAACCATTGCCCACCACTATCAAACAGTCAAACTAAGCTCTTTCCTATCATCTTCAATATGTAGTCCTTCAAGTAAACGTGACAAGAAAAGCATATCATTTGAAGTGGTTCACAAACTTGGACCATGTTCCAAGTTCAGTAAAAAGAAATTAAA...

Protein

Download Protein FASTA

485 aa · TkA04G205570|TK1151|PROTEIN

MKPSNSTIVFLAYCFLLVGIVAGKRSALDTSAGDAETIAHHYQTVKLSSFLSSSICSPSSKRDKKSISFEVVHKLGPCSKFSKKKLKAITLEEILTRDQSRVDTIRSRLTTTSTTRKKVINFKSSKATMPVKSGTTYDSGNYIVNVEIGTPKKNEQLILDSGSDLTWTQCQPCTGSCYTQQEPIFNPSLSTTYSNIPCTSTACSMIPSATGNLPGCSSSTCVYGVQYGDGSYSVGKLAKDKLTLTNNETLDDFYFGCGVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G205570`
TK1151 ID	TkA04G205570
OH-1004 ID	LXL04_034810
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.100
Protein coverage (%)	TK1151 96.907 / OH-1004 98.121 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G205570

Location Chr04:52786989-52789971 (+)

Description Similar to At5g10770: Aspartyl protease family protein At5g10770

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g10770`	Probably not redundant with AED1 and not involved in restriction of salicylic acid (SA) or systemic acquired resistance (SAR) signaling.	No verified direct reference in this release
`At5g10760`	Aspartyl protease involved in a homeostatic feedback mechanism regulating systemic immunity.	Contrasting Roles of the Apoplastic Aspartyl Protease APOPLASTIC, ENHANCED DISEASE SUSCEPTIBILITY1-DEPENDENT1 and LEGUME LECTIN-LIKE PROTEIN1 in Arabidopsis Systemic Acquired Resistance.2014 · DOI: 10.1104/pp.114.239665
`At1g01300`	Aspartyl protease.	No verified direct reference in this release
`At3g20015`	Aspartic protease that may be involved in drought avoidance through abscisic acid signaling.	No verified direct reference in this release
`At3g18490`	Aspartic protease involved in drought avoidance through abscisic acid signaling.	Overexpression of the aspartic protease ASPG1 gene confers drought avoidance in Arabidopsis.2012 · DOI: 10.1093/jxb/err433

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034810 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009627 systemic acquired resistance Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0048046 apoplast Cellular Component

GO:0098552 side of membrane Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0004190 aspartic-type endopeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G01300

ath:AT3G18490

ath:AT3G20015

ath:AT5G10760

ath:AT5G10770

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.629

Rank 1 · TkA04G205570 · TK1151

Cell membrane0.133

Rank 2 · TkA04G205570 · TK1151

Endoplasmic reticulum0.133

Rank 3 · TkA04G205570 · TK1151

Cytoplasm0.091

Rank 4 · TkA04G205570 · TK1151

Lysosome / Vacuole0.061

Rank 5 · TkA04G205570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11465Receptor_2B4115-146 aa

PF00026Asp141-195 aa

PF14543TAXi_N142-310 aa

PF00026Asp224-468 aa

PF14541TAXi_C333-467 aa

PF11465Receptor_2B4340-355 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G205570	`PF11465`	Receptor_2B4	115	146	0.2	12.6
TkA04G205570	`PF00026`	Asp	141	195	1.1e-24	88.2
TkA04G205570	`PF14543`	TAXi_N	142	310	8.9e-52	176.5
TkA04G205570	`PF00026`	Asp	224	468	1.1e-24	88.2
TkA04G205570	`PF14541`	TAXi_C	333	467	9.8e-23	81.4
TkA04G205570	`PF11465`	Receptor_2B4	340	355	0.2	12.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8S9J6`	Arabidopsis thaliana	sp\|Q8S9J6\|ASPA_ARATH Aspartyl protease family protein At5g10770	48.000%	Swiss-Prot	Medium
`Q9LEW3`	Arabidopsis thaliana	sp\|Q9LEW3\|AED1_ARATH Aspartyl protease AED1	44.100%	Swiss-Prot	Medium
`Q9LNJ3`	Arabidopsis thaliana	sp\|Q9LNJ3\|APF2_ARATH Aspartyl protease family protein 2	39.000%	Swiss-Prot	Medium
`Q9LHE3`	Arabidopsis thaliana	sp\|Q9LHE3\|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2	36.300%	Swiss-Prot	Medium
`Q9LS40`	Arabidopsis thaliana	sp\|Q9LS40\|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1	36.500%	Swiss-Prot	Medium

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