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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G197080
Reference: TK1151 Chr: Chr04 Coordinates: 50763829-50767847 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2908 bp · TkA04G197080|TK1151|cDNA

CAATGACAATTTACGTTCTCTCTCACACACAAACACCATAATCACACACTTCTCTCACTCGTCATCCCCCATGCATTTCTACAAGAAAGATATCCAAGCACAAATTCTTCTTTCTCACACACGCCATCTGTATATATATATATACTCTTCCCCAACTTCCACTTCTTCACACCTCCCATAACTTCTCACCTTCCCTACAACTACCAGCTTGCTGGGTCTCCCATGTCAAGGATAGTGGCGGACAATCTGATGACGGAAGC...

CDS

Download CDS FASTA

2334 bp · TkA04G197080|TK1151|CDS

ATGTCAAGGATAGTGGCGGACAATCTGATGACGGAAGCGTTTCATGATCGGCGACGGCAGGCGGCAGCGAATACAGCGCCTTCTCCGACTCTTGGAGAGCTTTTGAAGTATGTTGGAGATATTAGGAAGGAGGGAAATGGTGATGAGACGCCGGCGCATCGTGTTTTGGAGATGAGTGAAACCAGCAACGAGCCCCGGTCGTTGCCGTTTGTTTTATCGTTTAATAATCTCACCTATAGTGTAAAGGTTCGCAGTAAGAT...

Protein

Download Protein FASTA

777 aa · TkA04G197080|TK1151|PROTEIN

MSRIVADNLMTEAFHDRRRQAAANTAPSPTLGELLKYVGDIRKEGNGDETPAHRVLEMSETSNEPRSLPFVLSFNNLTYSVKVRSKMAVPVVFGGTTRLDGAPAATSMEAIGGERLFSRSKVLLNDISGQARDGEILAVLGASGSGKSTLIDALANRIAKGSLKGTVTLNGEQLESRLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKLRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G197080
TK1151 IDTkA04G197080
OH-1004 IDLXL04_022004
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)83.600
Protein coverage (%)TK1151 94.981 / OH-1004 98.770
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G197080
LocationChr04:50763829-50767847 (+)
DescriptionSimilar to ABCG1: ABC transporter G family member 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g39350 ABC transporter G family member 1. No verified direct reference in this release
At5g13580 ABC transporter G family member 6. No verified direct reference in this release
At3g55090 ABC transporter G family member 16. No verified direct reference in this release
At3g53510 ABC transporter G family member 20. No verified direct reference in this release
At2g37360 ABC transporter G family member 2. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022004 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009624 response to nematode Biological Process
GO:0010208 pollen wall assembly Biological Process
GO:0010345 suberin biosynthetic process Biological Process
GO:0055085 transmembrane transport Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
GO:0042626 ATPase-coupled transmembrane transporter activity Molecular Function
GO:0140359 ABC-type transporter activity Molecular Function
KEGG gene cross-reference
ath:AT2G37360
ath:AT2G39350
ath:AT3G53510
ath:AT3G55090
ath:AT5G13580
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.482
Rank 1 · TkA04G197080 · TK1151
Lysosome / Vacuole0.199
Rank 2 · TkA04G197080 · TK1151
Endoplasmic reticulum0.104
Rank 3 · TkA04G197080 · TK1151
Cytoplasm0.085
Rank 4 · TkA04G197080 · TK1151
Golgi apparatus0.082
Rank 5 · TkA04G197080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20703nSTAND1117-153 aa
PF25201nSTAND6117-162 aa
PF03308MeaB118-160 aa
PF13191AAA_16123-174 aa
PF00005ABC_tran124-276 aa
PF03193RsgA_GTPase126-157 aa
PF25199nSTAND_NTPase5130-180 aa
PF13481AAA_25132-170 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G197080PF20703nSTAND11171530.002818.1
TkA04G197080PF25201nSTAND61171620.006317.3
TkA04G197080PF03308MeaB1181600.0214.6
TkA04G197080PF13191AAA_161231740.0001523.1
TkA04G197080PF00005ABC_tran1242765.8e-2795.7
TkA04G197080PF03193RsgA_GTPase1261570.004517.6
TkA04G197080PF25199nSTAND_NTPase51301800.02315.2
TkA04G197080PF13481AAA_251321700.03114.6
TkA04G197080PF13555AAA_291331551.9e-0525.1
TkA04G197080PF13401AAA_221332460.002918.6
TkA04G197080PF02463SMC_N1351550.009816.1
TkA04G197080PF20720nSTAND31351600.3111.4
TkA04G197080PF01583APS_kinase1361800.3111.8
TkA04G197080PF13304AAA_211371593.2e-0524.8
TkA04G197080PF05729NACHT1371650.01116.2
TkA04G197080PF01935DUF871371660.03415.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O80946Arabidopsis thalianasp|O80946|AB1G_ARATH ABC transporter G family member 171.500%Swiss-ProtHigh
Q9FNB5Arabidopsis thalianasp|Q9FNB5|AB6G_ARATH ABC transporter G family member 673.000%Swiss-ProtHigh
Q9M2V7Arabidopsis thalianasp|Q9M2V7|AB16G_ARATH ABC transporter G family member 1670.400%Swiss-ProtHigh
Q9LFG8Arabidopsis thalianasp|Q9LFG8|AB20G_ARATH ABC transporter G family member 2071.800%Swiss-ProtHigh
Q9ZUT0Arabidopsis thalianasp|Q9ZUT0|AB2G_ARATH ABC transporter G family member 269.500%Swiss-ProtHigh

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