TkA04G195700 | RubberDandelionOmics

Gene overview

TkA04G195700

Reference: TK1151 Chr: Chr04 Coordinates: 50421404-50423280 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1426 bp · TkA04G195700|TK1151|cDNA

GTCCATCAACGATCTTCATCTTCTCAAGCTCCAAAATCTCTCTGCAGCAACAGGGGTTATCCTTGTCAAGGATCGAATCTTTTTGGTTGCTGCAGTAGATTTGAGGAGAAATGGGAAAGAAGAGTTGGTTTTCCGCTGTAACGAAAGTTATATCCACTTCTTATCTCAAAGAGAAGAAACTCAAGGTTTGTATCTCTTTCTTTCAGTTTTAATATGTTTCGCTAATGGCAATAACAAATTCTCATCGCGACAGAAATCCA...

CDS

Download CDS FASTA

1062 bp · TkA04G195700|TK1151|CDS

TCCATCAACGATCTTCATCTTCTCAAGCTCCAAAATCTCTCTGCAGCAACAGGGGTTATCCTTGTCAAGGATCGAATCTTTTTGGTTGCTGCAGTAGATTTGAGGAGAAATGGGAAAGAAGAGTTGGTTTTCCGCTGTAACGAAAGTTATATCCACTTCTTATCTCAAAGAGAAGAAACTCAAGAAATCCATAATAAATCAAAATCAACCAAAAAAGCATGCCATGGAAATCGAATGAGCTTGGATAAATCTTTATCTCC...

Protein

Download Protein FASTA

353 aa · TkA04G195700|TK1151|PROTEIN

SINDLHLLKLQNLSAATGVILVKDRIFLVAAVDLRRNGKEELVFRCNESYIHFLSQREETQEIHNKSKSTKKACHGNRMSLDKSLSPTKSILPIPKDEPKPEFKYEPMEQDSNPIAIQNTTSPADAEVNCVQSREDMAAIKIQKVYRGYMVRKGSNPLKAWRKLKMYMISHAVKRQGVSSLMSVQTMALVQSEVRTRKIRMAQVNEQLHQKRLNKLNIAKSSERSGWDLSPKSKEQVEESRRRKMEAIERKEKVLAFTNT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G195700`
TK1151 ID	TkA04G195700
OH-1004 ID	LXL04_034971
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	96.600
Protein coverage (%)	TK1151 83.003 / OH-1004 92.405 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G195700

Location Chr04:50421404-50423280 (+)

Description Similar to IQD1: Protein IQ-DOMAIN 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g09710`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins.	Arabidopsis IQD1, a novel calmodulin-binding nuclear protein, stimulates glucosinolate accumulation and plant defense.2005 · DOI: 10.1111/j.1365-313x.2005.02435.x Arabidopsis calmodulin-binding protein IQ67-domain 1 localizes to microtubules and interacts with kinesin light chain-related protein-1.2013 · DOI: 10.1074/jbc.m112.396200
`At3g52290`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At3g59690`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034971 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010089 xylem development Biological Process

GO:0019761 glucosinolate biosynthetic process Biological Process

GO:0051592 response to calcium ion Biological Process

GO:2000652 regulation of secondary cell wall biogenesis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0005874 microtubule Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT2G26410

ath:AT3G09710

ath:AT3G52290

ath:AT3G59690

ath:AT5G03040

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.510

Rank 1 · TkA04G195700 · TK1151

Nucleus0.333

Rank 2 · TkA04G195700 · TK1151

Cell membrane0.272

Rank 3 · TkA04G195700 · TK1151

Endoplasmic reticulum0.050

Rank 4 · TkA04G195700 · TK1151

Golgi apparatus0.033

Rank 5 · TkA04G195700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24609IQ_SCN5A_C134-154 aa

PF00612IQ137-153 aa

PF24609IQ_SCN5A_C159-166 aa

PF00612IQ263-272 aa

PF24609IQ_SCN5A_C263-274 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G195700	`PF24609`	IQ_SCN5A_C	134	154	0.037	14.2
TkA04G195700	`PF00612`	IQ	137	153	7.8e-06	25.9
TkA04G195700	`PF24609`	IQ_SCN5A_C	159	166	0.037	14.2
TkA04G195700	`PF00612`	IQ	263	272	7.8e-06	25.9
TkA04G195700	`PF24609`	IQ_SCN5A_C	263	274	0.037	14.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SF32`	Arabidopsis thaliana	sp\|Q9SF32\|IQD1_ARATH Protein IQ-DOMAIN 1	34.100%	Swiss-Prot	Medium
`Q9FT53`	Arabidopsis thaliana	sp\|Q9FT53\|IQD3_ARATH Protein IQ-DOMAIN 3	33.600%	Swiss-Prot	Medium
`Q9M199`	Arabidopsis thaliana	sp\|Q9M199\|IQD13_ARATH Protein IQ-DOMAIN 13	34.600%	Swiss-Prot	Low

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