TkA04G185320 | RubberDandelionOmics

Gene overview

TkA04G185320

Reference: TK1151 Chr: Chr04 Coordinates: 47893954-47906819 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2008 bp · TkA04G185320|TK1151|cDNA

AGATAAGAAAACGGAAATACACTGAGTTAACTCATCTCACTCGATCACTGTTCATAAGGCTTGTCCAAATTTAATATATAGTATAATGTTGAAAAAGTGTTTACAACGTGAGGGCTTCTCCCCGTGACCTCCGGCAACCACCCCACCACTCCTCTTTCTGTCTCCCATTCATCTCTCTCTCTCTCTCTCTCTCTCTACTGTAGTTGGTAGAAATCGTAACCAGAGAGCAGAGTCAGTCACTCGTACACAGTTAGACACAG...

CDS

Download CDS FASTA

1992 bp · TkA04G185320|TK1151|CDS

ATGAAGTCCAAATCACCAAATTTGAATCCTTCTATTGTCACTGTCGAACATAAGAGAGATGCATATGGTTTTCTTGTGAGGCCCCAGCATGTACAGAGATACCGTGAATATTCAAGCATTTACAAGGAGGAAGAGGAGGAACGATCTGAGAGGTGGAAGGACTTTCTAGAACGACAATCAGAGTCTGCTCAGGCTTCTGGTAAGGCCCCCGAAGGGGATGATGATGATCAAAAGGAAGAGGTGCCTGCAACTGTTCATCA...

Protein

Download Protein FASTA

663 aa · TkA04G185320|TK1151|PROTEIN

MKSKSPNLNPSIVTVEHKRDAYGFLVRPQHVQRYREYSSIYKEEEEERSERWKDFLERQSESAQASGKAPEGDDDDQKEEVPATVHQAQIWAHIRPSLQSIEDMMNARVNQKIDIAKTEKDDGTEKPEEDSEEEFYDMEKPESEQTPQLPSSNGVNTATESSIPWKEELECLVQGGVPMALRGELWQAFVGVKARRIEKYYQNLLNPDEKNEKWKGQIEKDLPRTFPGHPALDDDGRNALRRLLTAYARHNPSVGYCQAM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G185320`
TK1151 ID	TkA04G185320
OH-1004 ID	LXL04_012491
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	66.200
Protein coverage (%)	TK1151 97.134 / OH-1004 92.759 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA04G185320`
Location	Chr04:47893954-47906819 (+)
Description	Similar to Tbc1d8: TBC1 domain family member 8
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_012491` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0003008 system process Biological Process GO:0008015 blood circulation Biological Process GO:0008284 positive regulation of cell population proliferation Biological Process GO:0090630 activation of GTPase activity Biological Process GO:0005737 cytoplasm Cellular Component GO:0016020 membrane Cellular Component GO:0043332 mating projection tip Cellular Component GO:0005096 GTPase activator activity Molecular Function GO:0005509 calcium ion binding Molecular Function
KEGG gene cross-reference	hsa:11138 hsa:23158 mmu:54610 mmu:71310 sce:YGR100W These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.501

Rank 1 · TkA04G185320 · TK1151

Golgi apparatus0.259

Rank 2 · TkA04G185320 · TK1151

Cell membrane0.210

Rank 3 · TkA04G185320 · TK1151

Nucleus0.179

Rank 4 · TkA04G185320 · TK1151

Lysosome / Vacuole0.106

Rank 5 · TkA04G185320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00566RabGAP-TBC180-376 aa

PF12939DUF3837199-250 aa

PF23436RabGap-TBC_2239-398 aa

PF23436RabGap-TBC_2477-500 aa

PF05266DUF724483-569 aa

PF12939DUF3837488-516 aa

PF12939DUF3837520-568 aa

PF05266DUF724551-613 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G185320	`PF00566`	RabGAP-TBC	180	376	2.9e-54	184.7
TkA04G185320	`PF12939`	DUF3837	199	250	0.19	12.9
TkA04G185320	`PF23436`	RabGap-TBC_2	239	398	4.3e-26	92.6
TkA04G185320	`PF23436`	RabGap-TBC_2	477	500	4.3e-26	92.6
TkA04G185320	`PF05266`	DUF724	483	569	6.7	7.3
TkA04G185320	`PF12939`	DUF3837	488	516	0.19	12.9
TkA04G185320	`PF12939`	DUF3837	520	568	0.19	12.9
TkA04G185320	`PF05266`	DUF724	551	613	6.7	7.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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