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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G167550
Reference: TK1151 Chr: Chr04 Coordinates: 43301864-43304187 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1850 bp · TkA04G167550|TK1151|cDNA

GCTCACTCAACAATCACGTTCTTGAGCTTCTTGTTGTTCTTCTCAAGTTTAGCATTTGCTAAAACTCACTACCATGATTTCGTCGTCCAATCGACAAAAGTGACACGATTATGCAAGACCCGTACTTCAATTACGGTTAACGGACAGCTGCCCGGCCCGACCTTGGAAGTTAATAACGGTGATAGTTTAGTTATAAAGGTGGTCAACAAAGCAAAATACAATGTTACTATTCATTGGCATGGTGTTAGACAGATGAGGAC...

CDS

Download CDS FASTA

1686 bp · TkA04G167550|TK1151|CDS

GCTCACTCAACAATCACGTTCTTGAGCTTCTTGTTGTTCTTCTCAAGTTTAGCATTTGCTAAAACTCACTACCATGATTTCGTCGTCCAATCGACAAAAGTGACACGATTATGCAAGACCCGTACTTCAATTACGGTTAACGGACAGCTGCCCGGCCCGACCTTGGAAGTTAATAACGGTGATAGTTTAGTTATAAAGGTGGTCAACAAAGCAAAATACAATGTTACTATTCATTGGCATGGTGTTAGACAGATGAGGAC...

Protein

Download Protein FASTA

561 aa · TkA04G167550|TK1151|PROTEIN

AHSTITFLSFLLFFSSLAFAKTHYHDFVVQSTKVTRLCKTRTSITVNGQLPGPTLEVNNGDSLVIKVVNKAKYNVTIHWHGVRQMRTAWADGPEFITQCPIRPGGSYTYRFIISGQEGTLWWHAHSSWLRATVYGAIVIRPKEGDSYPFAKPKGDSVIILAEWWNANPVDVIRQATRTGGAPNVSDAYTINGQPGDLYNCSRKDTVIVPWNSGDTKLIRVINAALNQQLFFTIANHKLTVVGADASYVKPFTTSVLMLGP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G167550
TK1151 IDTkA04G167550
OH-1004 IDLXL04_035106
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 99.822
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G167550
LocationChr04:43301864-43304187 (+)
DescriptionSimilar to LAC12: Laccase-12
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g05390 Lignin degradation and detoxification of lignin-derived products. No verified direct reference in this release
At2g40370 Lignin degradation and detoxification of lignin-derived products. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0827300 Lignin degradation and detoxification of lignin-derived products. No verified direct reference in this release
Os11g0108700 Lignin degradation and detoxification of lignin-derived products. No verified direct reference in this release
Os12g0108000 Lignin degradation and detoxification of lignin-derived products. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035106 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0046274 lignin catabolic process Biological Process
GO:0046688 response to copper ion Biological Process
GO:1990641 response to iron ion starvation Biological Process
GO:0005576 extracellular region Cellular Component
GO:0048046 apoplast Cellular Component
GO:0048226 Casparian strip Cellular Component
GO:0005507 copper ion binding Molecular Function
GO:0016491 oxidoreductase activity Molecular Function
GO:0052716 hydroquinone:oxygen oxidoreductase activity Molecular Function
KEGG gene cross-reference
ath:AT2G40370
ath:AT5G05390
dosa:Os01g0827300
dosa:Os11g0108700
dosa:Os12g0108000
osa:4349566
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.953
Rank 1 · TkA04G167550 · TK1151
Cytoplasm0.021
Rank 2 · TkA04G167550 · TK1151
Cell membrane0.018
Rank 3 · TkA04G167550 · TK1151
Endoplasmic reticulum0.013
Rank 4 · TkA04G167550 · TK1151
Golgi apparatus0.007
Rank 5 · TkA04G167550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07732Cu-oxidase_329-143 aa
PF00394Cu-oxidase34-89 aa
PF07731Cu-oxidase_247-83 aa
PF05899Cupin_352-76 aa
PF05899Cupin_3133-159 aa
PF00394Cu-oxidase156-306 aa
PF29646YxzG175-238 aa
PF07731Cu-oxidase_2198-211 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G167550PF07732Cu-oxidase_3291432.8e-44150.7
TkA04G167550PF00394Cu-oxidase34893.9e-44151.2
TkA04G167550PF07731Cu-oxidase_247839.6e-46155.7
TkA04G167550PF05899Cupin_352760.0414.3
TkA04G167550PF05899Cupin_31331590.0414.3
TkA04G167550PF00394Cu-oxidase1563063.9e-44151.2
TkA04G167550PF29646YxzG1752380.09713.5
TkA04G167550PF07731Cu-oxidase_21982119.6e-46155.7
TkA04G167550PF07732Cu-oxidase_32092242.8e-44150.7
TkA04G167550PF07731Cu-oxidase_22452769.6e-46155.7
TkA04G167550PF07731Cu-oxidase_24105439.6e-46155.7
TkA04G167550PF05899Cupin_34254780.0414.3
TkA04G167550PF00394Cu-oxidase4424813.9e-44151.2
TkA04G167550PF07732Cu-oxidase_34594692.8e-44150.7
TkA04G167550PF07732Cu-oxidase_35125422.8e-44150.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FLB5Arabidopsis thalianasp|Q9FLB5|LAC12_ARATH Laccase-1274.200%Swiss-ProtHigh
Q9SIY8Arabidopsis thalianasp|Q9SIY8|LAC5_ARATH Laccase-571.400%Swiss-ProtHigh
Q941X2Oryza sativa subsp. japonicasp|Q941X2|LAC3_ORYSJ Laccase-366.600%Swiss-ProtHigh
Q2RBK2Oryza sativa subsp. japonicasp|Q2RBK2|LAC17_ORYSJ Putative laccase-1766.600%Swiss-ProtHigh
Q2QYS3Oryza sativa subsp. japonicasp|Q2QYS3|LAC23_ORYSJ Laccase-2366.800%Swiss-ProtHigh

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