TkA04G163360 | RubberDandelionOmics

Gene overview

TkA04G163360

Reference: TK1151 Chr: Chr04 Coordinates: 42186043-42188223 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1772 bp · TkA04G163360|TK1151|cDNA

CTTTTGTAAGGTTTCTCTTTTTCTGTGTAAATTTGACAACGTAAGTATCATCGAGGGGGTAACATGTAAATTTTATATGTGAAACCAACAATATGATAATTACAGAGAAGCCCCTGATTAGTTCACATGTTTCAATAATGCAATCACTTCCCTGGCTTGGCTGCTGTCACAGAAGAACTCCTCTGGCCTTTCTGCCGCTGAGGATGTTATCATCTTCATCAAACCCTAACCCTAGCTCGAAATCACATTACGCCTCCATG...

CDS

Download CDS FASTA

1332 bp · TkA04G163360|TK1151|CDS

ATGTTATCATCTTCATCAAACCCTAACCCTAGCTCGAAATCACATTACGCCTCCATGAACCTCAATTCCGATTCTTCATTATCATCTTCAAAGAGAATCCCGAATCTTCCTCCTCTGTTTCATCACGCCAACTGTAAAGGTTTATGTCAAGGCGTTACAGTCTCCAATGGCTTTTCTTCCTCTTCGCTGTCCGTCACGACCAATCCAGCTTCCGTTTCTGGAATCGATGAATCAGGAGACGCGGAGGAGCTTAAACTTGT...

Protein

Download Protein FASTA

443 aa · TkA04G163360|TK1151|PROTEIN

MLSSSSNPNPSSKSHYASMNLNSDSSLSSSKRIPNLPPLFHHANCKGLCQGVTVSNGFSSSSLSVTTNPASVSGIDESGDAEELKLVVVSFYKFADFPDHADLRKPLKDLCENLVNDSNTPHQTYTLQYISGGIILAPEGINGSICGIRKSVSKVLDFIQSDDRLKGLRQIESPVSPEEEAIHHGHTSSSPLAAGEDSPFRWDHVRVKLKKEIVSLGMPSVSPTEKVGKYVTPNEWNSLITDPDTVVIDVRNDYETRIGK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G163360`
TK1151 ID	TkA04G163360
OH-1004 ID	LXL04_035540
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	27.900
Protein coverage (%)	TK1151 72.912 / OH-1004 73.735 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G163360

Location Chr04:42186043-42188223 (-)

Description Similar to STR8: Rhodanese-like domain-containing protein 8, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g40760`	Rhodanese-like domain-containing protein 7.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_035540 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006400 tRNA modification Biological Process

GO:0009507 chloroplast Cellular Component

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Molecular Function

KEGG gene cross-reference

ath:AT1G17850

cfe:BAE81768.1

cmu:TC_0916

ctr:CT_627

pcu:PC_RS01855

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.871

Rank 1 · TkA04G163360 · TK1151

Mitochondrion0.183

Rank 2 · TkA04G163360 · TK1151

Cytoplasm0.061

Rank 3 · TkA04G163360 · TK1151

Nucleus0.038

Rank 4 · TkA04G163360 · TK1151

Peroxisome0.018

Rank 5 · TkA04G163360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17773UPF0176_N87-213 aa

PF00581Rhodanese232-339 aa

PF12368Rhodanese_C349-382 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G163360	`PF17773`	UPF0176_N	87	213	8.1e-16	58.9
TkA04G163360	`PF00581`	Rhodanese	232	339	3.7e-09	37.7
TkA04G163360	`PF12368`	Rhodanese_C	349	382	0.00081	20.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q1JPN0`	Arabidopsis thaliana	sp\|Q1JPN0\|STR7_ARATH Rhodanese-like domain-containing protein 7	69.000%	Swiss-Prot	High

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