Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2268 bp · TkA04G163060|TK1151|cDNA
ATGGCATCCCAAGTCCATCAGCAGCGAGTCAACGGTGTCTATGGAGCATCTCCAATGGAAGCGCAATCTCAAAACCCCAGCAAAGCCTCTCCCACGCCAATGGAGAAACTCAAATCAGCAATCCCAAAAACCCTAATCCTCTCAATTTCACAAAGCAATCCTCATACTCTCCCTAATACTTGCTCGTCTCTTCATGATTTCCTTAATCAGTTGCCCCATTTTCACCAAATGGTCGAAGATTTAGCGCACAAGGAGACATC...
2268 bp · TkA04G163060|TK1151|CDS
ATGGCATCCCAAGTCCATCAGCAGCGAGTCAACGGTGTCTATGGAGCATCTCCAATGGAAGCGCAATCTCAAAACCCCAGCAAAGCCTCTCCCACGCCAATGGAGAAACTCAAATCAGCAATCCCAAAAACCCTAATCCTCTCAATTTCACAAAGCAATCCTCATACTCTCCCTAATACTTGCTCGTCTCTTCATGATTTCCTTAATCAGTTGCCCCATTTTCACCAAATGGTCGAAGATTTAGCGCACAAGGAGACATC...
Protein
Download Protein FASTA755 aa · TkA04G163060|TK1151|PROTEIN
MASQVHQQRVNGVYGASPMEAQSQNPSKASPTPMEKLKSAIPKTLILSISQSNPHTLPNTCSSLHDFLNQLPHFHQMVEDLAHKETSLFHKNKESALEFKLKGNNCFSNRDNSNALRFYTQALRVAPRDVDHMGKNLVATLYVNRAAVLQKMDFVEESLHDCNQALAMCKSYSKAWYRRSKANTSMGNYDNAVCDLKVSLYMEHSISGKKQIEHELNLILNQHNGKESPPNVDIYKDPDINDQLQQIQLQCVTTETKGRG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G163060 |
|---|---|
| TK1151 ID | TkA04G163060 |
| OH-1004 ID | LXL04_008072 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 75.000 |
| Protein coverage (%) | TK1151 6.358 / OH-1004 15.686Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G163060 |
|---|---|
| Location | Chr04:42106023-42112112 (+) |
| Description | Similar to YPQ1: Probable vacuolar amino acid transporter YPQ1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0034488 basic amino acid transmembrane export from vacuole Biological Process GO:0090513 L-histidine transmembrane import into vacuole Biological Process GO:0090517 L-lysine transmembrane import into vacuole Biological Process GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0016020 membrane Cellular Component GO:0031966 mitochondrial membrane Cellular Component GO:0005290 L-histidine transmembrane transporter activity Molecular Function GO:0015174 basic amino acid transmembrane transporter activity Molecular Function GO:0015189 L-lysine transmembrane transporter activity Molecular Function |
| KEGG gene cross-reference | sce:YBR147W sce:YOL092W These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF25575TPR_BSK1_C79-177 aaPF00515TPR_199-128 aaPF07719TPR_2101-129 aaPF13181TPR_8102-128 aaPF13424TPR_12107-126 aaPF13374TPR_10113-125 aaPF17874TPR_MalT114-176 aaPF24885TPR_NPHP3114-155 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G163060 | PF25575 | TPR_BSK1_C | 79 | 177 | 5.1e-06 | 27.1 |
| TkA04G163060 | PF00515 | TPR_1 | 99 | 128 | 1.3e-05 | 25.5 |
| TkA04G163060 | PF07719 | TPR_2 | 101 | 129 | 2.2e-07 | 31.2 |
| TkA04G163060 | PF13181 | TPR_8 | 102 | 128 | 0.012 | 16.5 |
| TkA04G163060 | PF13424 | TPR_12 | 107 | 126 | 2e-11 | 44.6 |
| TkA04G163060 | PF13374 | TPR_10 | 113 | 125 | 2.8e-06 | 27.9 |
| TkA04G163060 | PF17874 | TPR_MalT | 114 | 176 | 7.5e-06 | 26.2 |
| TkA04G163060 | PF24885 | TPR_NPHP3 | 114 | 155 | 0.00033 | 20.8 |
| TkA04G163060 | PF13424 | TPR_12 | 138 | 193 | 2e-11 | 44.6 |
| TkA04G163060 | PF13374 | TPR_10 | 138 | 170 | 2.8e-06 | 27.9 |
| TkA04G163060 | PF07719 | TPR_2 | 139 | 170 | 2.2e-07 | 31.2 |
| TkA04G163060 | PF00515 | TPR_1 | 140 | 170 | 1.3e-05 | 25.5 |
| TkA04G163060 | PF13181 | TPR_8 | 140 | 169 | 0.012 | 16.5 |
| TkA04G163060 | PF01753 | zf-MYND | 162 | 177 | 9.9e-05 | 23.0 |
| TkA04G163060 | PF07719 | TPR_2 | 174 | 192 | 2.2e-07 | 31.2 |
| TkA04G163060 | PF00515 | TPR_1 | 174 | 193 | 1.3e-05 | 25.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.