TkA04G146930 | RubberDandelionOmics

Gene overview

TkA04G146930

Reference: TK1151 Chr: Chr04 Coordinates: 38049339-38050718 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1380 bp · TkA04G146930|TK1151|cDNA

ATGTCATTACTCTTCACATCAAGCAACAATAACCTCATCATCCACGCGGCTCTGTCTCTCTTCCTCACTCTCCTCTTCTCCTTCATCAAGATCCCATCTTTCGTCCTACATGGACTCCACACTTACATCCACCCTGATGACGTCGCCCCCACAAACCCCAACTCCTCCGGCATCAAAGCCGCAATTCGACGGCCAGGTGACACCACCACCGGCGAATTGAAGCCCAGGAAGAAATCCAATAAGTTTGAGTTTGACGAAAA...

CDS

Download CDS FASTA

1380 bp · TkA04G146930|TK1151|CDS

ATGTCATTACTCTTCACATCAAGCAACAATAACCTCATCATCCACGCGGCTCTGTCTCTCTTCCTCACTCTCCTCTTCTCCTTCATCAAGATCCCATCTTTCGTCCTACATGGACTCCACACTTACATCCACCCTGATGACGTCGCCCCCACAAACCCCAACTCCTCCGGCATCAAAGCCGCAATTCGACGGCCAGGTGACACCACCACCGGCGAATTGAAGCCCAGGAAGAAATCCAATAAGTTTGAGTTTGACGAAAA...

Protein

Download Protein FASTA

459 aa · TkA04G146930|TK1151|PROTEIN

MSLLFTSSNNNLIIHAALSLFLTLLFSFIKIPSFVLHGLHTYIHPDDVAPTNPNSSGIKAAIRRPGDTTTGELKPRKKSNKFEFDENKAQIFRLKLNHNHLQSRLYFDQFRGVFNFTIVACCCLLLHNFLPSSKDASGVLPNGTLIPILLGILGLARIFVTIARVSFERSASKSSEKQLSLFIGFSATVIAFLIVLEVIPNWVFDFAFESLDGYGKFTTAVFMGSLAGLLYIPATKTARAYWLGTDQIRCNLSMIHCGWF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G146930`
TK1151 ID	TkA04G146930
OH-1004 ID	LXL04_035281
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA04G146930`
Location	Chr04:38049339-38050718 (-)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_035281` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0002027 regulation of heart rate Biological Process GO:0098901 regulation of cardiac muscle cell action potential Biological Process GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference	hsa:153396 mmu:72745 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.495

Rank 1 · TkA04G146930 · TK1151

Cell membrane0.162

Rank 2 · TkA04G146930 · TK1151

Nucleus0.161

Rank 3 · TkA04G146930 · TK1151

Lysosome / Vacuole0.149

Rank 4 · TkA04G146930 · TK1151

Golgi apparatus0.146

Rank 5 · TkA04G146930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10268Tmemb_161AB103-210 aa

PF10268Tmemb_161AB216-401 aa

PF10268Tmemb_161AB424-446 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G146930	`PF10268`	Tmemb_161AB	103	210	9.7e-10	38.5
TkA04G146930	`PF10268`	Tmemb_161AB	216	401	9.7e-10	38.5
TkA04G146930	`PF10268`	Tmemb_161AB	424	446	9.7e-10	38.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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