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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G140630
Reference: TK1151 Chr: Chr04 Coordinates: 36384006-36384953 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

903 bp · TkA04G140630|TK1151|cDNA

ATGAAAGCTGATTTGGAATCGTTTTTAAAATCCGAACAGTACTATCACCGTCTCGGCCGTGTCTGGAAACGAAGTTATTTACTCTACGGTCCCTCCGGCACTGGAAAATCAAGCTTCATCGCCGGAATGGCGAAGTTTCTATGCTACGATATCTACGACGTTGACTTGTCCAAAATCGCCAACGATTCTGATCTGAAATTGCTTCTACTACAAACGACGAGAAGGTCAATGATCGTCGTTGAAGATTTAGACCGGTATTT...

CDS

Download CDS FASTA

903 bp · TkA04G140630|TK1151|CDS

ATGAAAGCTGATTTGGAATCGTTTTTAAAATCCGAACAGTACTATCACCGTCTCGGCCGTGTCTGGAAACGAAGTTATTTACTCTACGGTCCCTCCGGCACTGGAAAATCAAGCTTCATCGCCGGAATGGCGAAGTTTCTATGCTACGATATCTACGACGTTGACTTGTCCAAAATCGCCAACGATTCTGATCTGAAATTGCTTCTACTACAAACGACGAGAAGGTCAATGATCGTCGTTGAAGATTTAGACCGGTATTT...

Protein

Download Protein FASTA

300 aa · TkA04G140630|TK1151|PROTEIN

MKADLESFLKSEQYYHRLGRVWKRSYLLYGPSGTGKSSFIAGMAKFLCYDIYDVDLSKIANDSDLKLLLLQTTRRSMIVVEDLDRYLVEKSTALNLSGILSFMDGIISSCGEERVMIFTVSNKEQIDPTVLRPGRIDVHVQFPLCDFPAFKTLANSHLGIKEHKLFPQVEEIFQTGASLSPAEIGEIMIFNRGSPTRALKTVISALKSNNDTKVTVIASKPVSASKSEEPLRLTHSVSVGGPVGLPPRLMHSGSARTVEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G140630
TK1151 IDTkA04G140630
OH-1004 IDLXL04_035378
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)95.200
Protein coverage (%)TK1151 100.000 / OH-1004 69.231
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G140630
LocationChr04:36384006-36384953 (-)
DescriptionSimilar to At2g46620: AAA-ATPase At2g46620
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g46620 AAA-ATPase At2g46620. No verified direct reference in this release
At5g17760 AAA-ATPase At5g17760. No verified direct reference in this release
At5g17730 AAA-ATPase At5g17730. No verified direct reference in this release
At3g50930 Protein HYPER-SENSITIVITY-RELATED 4. No verified direct reference in this release
At3g50940 AAA-ATPase At3g50940. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035378 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006950 response to stress Biological Process
GO:0009651 response to salt stress Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
KEGG gene cross-reference
ath:AT2G46620
ath:AT3G50940
ath:AT5G17730
ath:AT5G17740
ath:AT5G17760
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.428
Rank 1 · TkA04G140630 · TK1151
Nucleus0.374
Rank 2 · TkA04G140630 · TK1151
Cell membrane0.095
Rank 3 · TkA04G140630 · TK1151
Plastid0.092
Rank 4 · TkA04G140630 · TK1151
Mitochondrion0.051
Rank 5 · TkA04G140630 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13191AAA_1615-48 aa
PF03215Rad1720-52 aa
PF00519PPV_E1_C21-51 aa
PF08298AAA_PrkA22-89 aa
PF12775AAA_723-51 aa
PF13479AAA_2424-51 aa
PF13555AAA_2924-48 aa
PF13401AAA_2224-57 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G140630PF13191AAA_1615480.002918.9
TkA04G140630PF03215Rad1720520.1912.4
TkA04G140630PF00519PPV_E1_C21510.05513.3
TkA04G140630PF08298AAA_PrkA22890.003917.0
TkA04G140630PF12775AAA_723510.1212.6
TkA04G140630PF13479AAA_2424510.001219.3
TkA04G140630PF13555AAA_2924480.005717.1
TkA04G140630PF13401AAA_2224570.06914.2
TkA04G140630PF20703nSTAND124440.1312.6
TkA04G140630PF25199nSTAND_NTPase524910.1912.3
TkA04G140630PF00004AAA261443.5e-1247.6
TkA04G140630PF05673DUF815261250.001218.7
TkA04G140630PF20720nSTAND3261220.008416.5
TkA04G140630PF00910RNA_helicase27870.02216.0
TkA04G140630PF07728AAA_527660.03215.0
TkA04G140630PF13238AAA_18271130.06614.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4IJ77Arabidopsis thalianasp|F4IJ77|AATP4_ARATH AAA-ATPase At2g4662059.300%Swiss-ProtHigh
Q9FN75Arabidopsis thalianasp|Q9FN75|AATPI_ARATH AAA-ATPase At5g1776041.300%Swiss-ProtMedium
Q9FN78Arabidopsis thalianasp|Q9FN78|AATPF_ARATH AAA-ATPase At5g1773042.100%Swiss-ProtMedium
Q8VZG2Arabidopsis thalianasp|Q8VZG2|HSR4_ARATH Protein HYPER-SENSITIVITY-RELATED 443.200%Swiss-ProtMedium
Q147F9Arabidopsis thalianasp|Q147F9|AATPC_ARATH AAA-ATPase At3g5094043.100%Swiss-ProtMedium

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