TkA04G130910 | RubberDandelionOmics

Gene overview

TkA04G130910

Reference: TK1151 Chr: Chr04 Coordinates: 34125681-34128506 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2148 bp · TkA04G130910|TK1151|cDNA

CTGAGATCTTCCCTGCAAATTTAGTGATCTACATTCTACACTCATAACACTAGTCTTTCTTATTTGTAGTGAACAGTTTAAAGATTTCTTGAAATCTGCTACTTCAGTTTCATGGGGTTAGTTCTCAAGGTTCAAGGTTTTAGCATCGATCGATTCTTCAATTCCTATGTGTTTCTTCTTTGATGGGCAAAATGGTTGGTGGTAGGCAGTACTCTTCGTCCTCTATGAGCTCTATCAGCAGAATAACTAGATCTCCATTC...

CDS

Download CDS FASTA

894 bp · TkA04G130910|TK1151|CDS

ATGCAAGACGCTTTACAGGGTGAAGCTTTGAAATGGGTTACCGATCAGCCTGCATGGAAGCGGTCTGAAGGAAGAGATCACATATTTCCAATTCATCATCCATGGTCTTTCAAATCTGTTCGCAAATTTGTGAAAAACGCAATTTGGCTCTTACCAGATATGGACTCCACAGGAAACTGGTACAAACCTGGCCAAGTTTCACTAGAAAAAGATTTGATACTTCCATATGTTCCAAATCTTGATTTATGTGACGCCAAATG...

Protein

Download Protein FASTA

297 aa · TkA04G130910|TK1151|PROTEIN

MQDALQGEALKWVTDQPAWKRSEGRDHIFPIHHPWSFKSVRKFVKNAIWLLPDMDSTGNWYKPGQVSLEKDLILPYVPNLDLCDAKCLSENAPKRTTLLYFRGRLKRNAGGKIRSKLGSELGNAADVIIEEGSAGEAGKIAAQSGMRRSVFCLSPAGDTPSSARLFDAIVSGCIPVIVSDELELPFEGFLDYRKISIFVSSSDAVQPGWLLTYLRSIKPTQIKEMQNNLAKYTRHFLYSHPAQPLGPEDLVWRMMAGKVA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G130910`
TK1151 ID	TkA04G130910
OH-1004 ID	LXL04_035440
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.600
Protein coverage (%)	TK1151 98.653 / OH-1004 55.810 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G130910

Location Chr04:34125681-34128506 (+)

Description Similar to ARAD1: Probable arabinosyltransferase ARAD1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g35100`	Probable arabinosyl transferase responsible for the polymerization of arabinose into the arabinan of arabinogalactan.	ARABINAN DEFICIENT 1 is a putative arabinosyltransferase involved in biosynthesis of pectic arabinan in Arabidopsis.2006 · DOI: 10.1104/pp.105.072744 Cell wall pectic arabinans influence the mechanical properties of Arabidopsis thaliana inflorescence stems and their response to mechanical stress.2013 · DOI: 10.1093/pcp/pct074
`At5g44930`	Probable arabinosyl transferase responsible for the polymerization of arabinose into the arabinan of arabinogalactan.	Cell wall pectic arabinans influence the mechanical properties of Arabidopsis thaliana inflorescence stems and their response to mechanical stress.2013 · DOI: 10.1093/pcp/pct074
`At5g61840`	Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls.	No verified direct reference in this release
`At3g42180`	May be involved in cell wall biosynthesis.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0520750`	Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035440 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0009832 plant-type cell wall biogenesis Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010417 glucuronoxylan biosynthetic process Biological Process

GO:0035884 arabinan biosynthetic process Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0045489 pectin biosynthetic process Biological Process

GO:0045492 xylan biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT2G35100

ath:AT5G22940

ath:AT5G44930

ath:AT5G61840

dosa:Os10g0180000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.754

Rank 1 · TkA04G130910 · TK1151

Endoplasmic reticulum0.131

Rank 2 · TkA04G130910 · TK1151

Nucleus0.064

Rank 3 · TkA04G130910 · TK1151

Extracellular0.049

Rank 4 · TkA04G130910 · TK1151

Cell membrane0.044

Rank 5 · TkA04G130910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03016Exostosin_GT475-213 aa

PF24785RXYLT1_C144-178 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G130910	`PF03016`	Exostosin_GT47	5	213	6.5e-58	197.1
TkA04G130910	`PF24785`	RXYLT1_C	144	178	0.042	14.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q6DBG8`	Arabidopsis thaliana	sp\|Q6DBG8\|ARAD1_ARATH Probable arabinosyltransferase ARAD1	39.600%	Swiss-Prot	Medium
`Q9FLA5`	Arabidopsis thaliana	sp\|Q9FLA5\|ARAD2_ARATH Probable arabinosyltransferase ARAD2	38.500%	Swiss-Prot	Medium
`Q940Q8`	Arabidopsis thaliana	sp\|Q940Q8\|IX10L_ARATH Probable beta-1,4-xylosyltransferase IRX10L	29.500%	Swiss-Prot	Low
`Q3EAR7`	Arabidopsis thaliana	sp\|Q3EAR7\|GLYT2_ARATH Probable glycosyltransferase At3g42180	28.000%	Swiss-Prot	Low
`Q6H4N0`	Oryza sativa subsp. japonica	sp\|Q6H4N0\|GT21_ORYSJ Probable glucuronosyltransferase Os02g0520750	29.800%	Swiss-Prot	Low

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