RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G128080
Reference: TK1151 Chr: Chr04 Coordinates: 33315837-33322508 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1945 bp · TkA04G128080|TK1151|cDNA

TAATATCTAGAGACACAGGTTTTAATCATACTCTGTATTGCAGGTTGCTACCAGCTTTTATTCTTCAAATACAAATGTTTCAAGTGAAAACTTTCTTCCACAACTTAAAAAACTCGATGACTGCATCACGTATGTTGAAAATAATCCCCAGTATGCCGAGTCCAACGTTTATCTGGTCAAATTTCGCCAACTTCAATCTCGAGCACTTGGAATGATACGTGCTCATGTTCTTTCTGTTCTCAAAAGCAGTACTTCTCAGG...

CDS

Download CDS FASTA

2334 bp · TkA04G128080|TK1151|CDS

ATGACTACTACCGCCAAAACAGGCGATCAAAAATCAGAAGCTGTTTCAAGAGCTCACAACTTCGGCTCTACATGGGAACAGAATGCTCCCCTAACTGAGCAGCAACATGCAGCAATAATAGCACTCTCTCATGCAGTTGTGGATCGACCATTTCCTTCCAAATTGTCACAGGAAAGTATATCCAAAGAGAATAATGGTTCATCTATTTCAACAAGGCATGGCACAGTGGAAGAATCTGGTGATATAGATGGTGTTTTGGT...

Protein

Download Protein FASTA

777 aa · TkA04G128080|TK1151|PROTEIN

MTTTAKTGDQKSEAVSRAHNFGSTWEQNAPLTEQQHAAIIALSHAVVDRPFPSKLSQESISKENNGSSISTRHGTVEESGDIDGVLVNTNQFYKWFTDLEAAMKSETEEKYQQYVNTLTERIQTCDGILQQVDETLDLFNELQMQHQVVATKTKTLHDACDRMVIEKQRLIEFAESLRSKLNYFDELESVATSFYSSNTNVSSENFLPQLKKLDDCITYVENNPQYAESNVYLVKFRQLQSRALGMIRAHVLSVLKSSTS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G128080
TK1151 IDTkA04G128080
OH-1004 IDLXL04_018798
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G128080
LocationChr04:33315837-33322508 (-)
DescriptionSimilar to COG3: Conserved oligomeric Golgi complex subunit 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g73430 Acts as a component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking.
Arabidopsis COG Complex Subunits COG3 and COG8 Modulate Golgi Morphology, Vesicle Trafficking Homeostasis and Are Essential for Pollen Tube Growth.2016 · DOI: 10.1371/journal.pgen.1006140

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018798 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000301 retrograde transport, vesicle recycling within Golgi Biological Process
GO:0006886 intracellular protein transport Biological Process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum Biological Process
GO:0006891 intra-Golgi vesicle-mediated transport Biological Process
GO:0007030 Golgi organization Biological Process
GO:0009101 glycoprotein biosynthetic process Biological Process
GO:0009860 pollen tube growth Biological Process
GO:0033365 protein localization to organelle Biological Process
GO:0048193 Golgi vesicle transport Biological Process
GO:0050821 protein stabilization Biological Process
GO:0000139 Golgi membrane Cellular Component
KEGG gene cross-reference
aag:5570156
ath:AT1G73430
dpo:4817142
hsa:83548
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.560
Rank 1 · TkA04G128080 · TK1151
Cytoplasm0.497
Rank 2 · TkA04G128080 · TK1151
Cell membrane0.113
Rank 3 · TkA04G128080 · TK1151
Endoplasmic reticulum0.111
Rank 4 · TkA04G128080 · TK1151
Lysosome / Vacuole0.110
Rank 5 · TkA04G128080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14966DNA_repr_REX1B93-137 aa
PF25101Spectrin_793-140 aa
PF19269Anticodon_299-149 aa
PF07303Occludin_ELL107-170 aa
PF04136COG3_N113-256 aa
PF01335DED128-163 aa
PF20671COG3_C135-175 aa
PF19269Anticodon_2165-213 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G128080PF14966DNA_repr_REX1B931370.1913.0
TkA04G128080PF25101Spectrin_7931405.68.1
TkA04G128080PF19269Anticodon_2991490.1313.4
TkA04G128080PF07303Occludin_ELL1071700.9211.0
TkA04G128080PF04136COG3_N1132562.5e-42145.0
TkA04G128080PF01335DED1281630.113.5
TkA04G128080PF20671COG3_C1351753.4e-105352.4
TkA04G128080PF19269Anticodon_21652130.1313.4
TkA04G128080PF25101Spectrin_71672025.68.1
TkA04G128080PF20671COG3_C2845923.4e-105352.4
TkA04G128080PF07303Occludin_ELL3023270.9211.0
TkA04G128080PF01335DED4024220.113.5
TkA04G128080PF04136COG3_N4254542.5e-42145.0
TkA04G128080PF19269Anticodon_25836040.1313.4
TkA04G128080PF04136COG3_N6276472.5e-42145.0
TkA04G128080PF25101Spectrin_76336745.68.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4HQ84Arabidopsis thalianasp|F4HQ84|COG3_ARATH Conserved oligomeric Golgi complex subunit 376.900%Swiss-ProtHigh

JBrowse

View in Genome Browser