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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G126550
Reference: TK1151 Chr: Chr04 Coordinates: 32866694-32870948 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1551 bp · TkA04G126550|TK1151|cDNA

AGAATACACCTATTTCCTCCGTCCACCATCAAAAAGCTTAAAAAGCTATATATTCTTTCCCCTCTCTCTCAATCATCGGAATCTCCGGCCAATCAAGCTTTAAGCAAGCACAGTTGGAGAAATCGGAGAGAGGGAGAGACTGTGTGATTGTTTTGATTGAAATTTCAATTAGGGATTGCTTCGATTAAATTGAGTTTTTATTATTTATCTTCGAGTACCAATTAGGGCGCAGGTGCGTTATTGTGTTGAAGAATAAACGT...

CDS

Download CDS FASTA

1524 bp · TkA04G126550|TK1151|CDS

ATGAAGATATCTTCCATACTTTCCATTTCCAATGTTGCAGCTGCCATATTACTCCGCCATTATAACTGGAGTGTCAGCAAAGTGAATGACGAATGGTTTGCTGATGAAGAAAAGGTTCGCAGGGTTGTTGGATTGTTGGAGGATCCACGTGCACTTCCTAATGTCAAAGAGTTGACATGTGGCATTTGCTTTGAAGTCTACTCTTCTGATAGCATGCGTTCTGCTGCTTGTGGTCATCCTTTCTGTGTAACTTGTTGGCA...

Protein

Download Protein FASTA

507 aa · TkA04G126550|TK1151|PROTEIN

MKISSILSISNVAAAILLRHYNWSVSKVNDEWFADEEKVRRVVGLLEDPRALPNVKELTCGICFEVYSSDSMRSAACGHPFCVTCWQGYISTSINDGPGCLMLRCPDPSCSAAVGQDMIVSMASHEDTEKYQRYFLRSFVEDNRKTKWCPAPGCDYAVDFIVGGGTFDVTCGCSYSFLLELYEEAHRPVDCDTVSKWIMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G126550
TK1151 IDTkA04G126550
OH-1004 IDLXL04_035501
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.400
Protein coverage (%)TK1151 100.000 / OH-1004 87.113
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G126550
LocationChr04:32866694-32870948 (+)
DescriptionSimilar to ARI8: Probable E3 ubiquitin-protein ligase ARI8
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g65430 Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates. No verified direct reference in this release
At2g31510 Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates. No verified direct reference in this release
At1g05890 Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates. No verified direct reference in this release
At1g63760 Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates. No verified direct reference in this release
At2g31770 Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035501 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0000151 ubiquitin ligase complex Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0031624 ubiquitin conjugating enzyme binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G05890
ath:AT1G65430
ath:AT2G31510
ath:AT2G31770
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.527
Rank 1 · TkA04G126550 · TK1151
Nucleus0.460
Rank 2 · TkA04G126550 · TK1151
Cell membrane0.074
Rank 3 · TkA04G126550 · TK1151
Lysosome / Vacuole0.052
Rank 4 · TkA04G126550 · TK1151
Golgi apparatus0.052
Rank 5 · TkA04G126550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21235UBA_ARI12-33 aa
PF26000UBA_ARIH2_N2-30 aa
PF17978zf-RING_1453-133 aa
PF13639zf-RING_259-100 aa
PF24921RING_XB3-XBAT3159-93 aa
PF13923zf-C3HC4_260-92 aa
PF13445zf-RING_UBOX60-86 aa
PF00097zf-C3HC460-95 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G126550PF21235UBA_ARI12332.4e-0731.1
TkA04G126550PF26000UBA_ARIH2_N2300.02415.3
TkA04G126550PF17978zf-RING_14531330.2612.4
TkA04G126550PF13639zf-RING_2591000.001219.8
TkA04G126550PF24921RING_XB3-XBAT3159930.01516.0
TkA04G126550PF13923zf-C3HC4_260922.9e-0524.5
TkA04G126550PF13445zf-RING_UBOX60863.2e-0524.6
TkA04G126550PF00097zf-C3HC460950.001918.7
TkA04G126550PF14634zf-RING_560890.02815.1
TkA04G126550PF26200Rcat_RNF21671880.001719.6
TkA04G126550PF01485IBR72872.7e-1660.1
TkA04G126550PF22191IBR_175892.6e-1453.5
TkA04G126550PF22605IBR_275864.2e-1246.7
TkA04G126550PF22191IBR_1961102.6e-1453.5
TkA04G126550PF01485IBR1021162.7e-1660.1
TkA04G126550PF01485IBR1291912.7e-1660.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8W468Arabidopsis thalianasp|Q8W468|ARI8_ARATH Probable E3 ubiquitin-protein ligase ARI873.800%Swiss-ProtHigh
Q84RR0Arabidopsis thalianasp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI774.700%Swiss-ProtHigh
Q8L829Arabidopsis thalianasp|Q8L829|ARI5_ARATH Probable E3 ubiquitin-protein ligase ARI572.400%Swiss-ProtHigh
P0C8K8Arabidopsis thalianasp|P0C8K8|ARI6_ARATH Putative E3 ubiquitin-protein ligase ARI669.100%Swiss-ProtHigh
Q9SKC3Arabidopsis thalianasp|Q9SKC3|ARI9_ARATH Probable E3 ubiquitin-protein ligase ARI958.400%Swiss-ProtHigh

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