TkA04G123760 | RubberDandelionOmics

Gene overview

TkA04G123760

Reference: TK1151 Chr: Chr04 Coordinates: 32146308-32149082 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2017 bp · TkA04G123760|TK1151|cDNA

ATAACCTTCCATGTGGTCAGTGCAGCTTCTTCCCCCTTTCCCCCTCCTCTACTACTGAAGAACACATATTCTCTCTTTTCTACACTTCGAAATTCGTGCCTTGAAGATTCTACTCCTTTTCAGCTCATAAAATTGAATTTAGCAACAACTCCAAGATCTTTACTATAAACATTCTCAAGGCAAATCATGGTATCCGAATCATGGTTCCATAACATCTGGAAACCTCTAAAGAACCACGACCATGGTCCCGAAAAGGCACG...

CDS

Download CDS FASTA

1557 bp · TkA04G123760|TK1151|CDS

ATGGTATCCGAATCATGGTTCCATAACATCTGGAAACCTCTAAAGAACCACGACCATGGTCCCGAAAAGGCACGAATTGGAGTATTGGTGTTTGAAGTAGCAAGTGTAATGTCAAAGCTTGTTCATCAATGGAACTCCCTTTCTGACAAACAAGTCATGAAGTTAAGAGAAGAAATCAGCAACTCAATAGGCATCAAGAAACTCATATCAGAAGATGATGACCACATAGTAGATTTAATCTGCACCGAAATGCTCCACAA...

Protein

Download Protein FASTA

518 aa · TkA04G123760|TK1151|PROTEIN

MVSESWFHNIWKPLKNHDHGPEKARIGVLVFEVASVMSKLVHQWNSLSDKQVMKLREEISNSIGIKKLISEDDDHIVDLICTEMLHNLENTAKVVTRLSKKCKDPILSCFERAYDDLIKHGVDQYQWQVSWKKMNTKVKKMETFIMVNANLYQEMETLTELEQMVKRLKTNDEHDTITVVEYTKKLTWKQKQVRRLKDISLWNKTYDYVVLILASSIFTIFARIGHVFGITHVLPQIQESMLQDCSRGQSVSGFLESSIT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G123760`
TK1151 ID	TkA04G123760
OH-1004 ID	LXL04_035558
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 93.050 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G123760

Location Chr04:32146308-32149082 (-)

Description Similar to PSI1: Protein PSK SIMULATOR 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g08660`	Promotes plant growth, especially at the vegetative stage, probably via the regulation of phytosulfokine (PSK) signaling; PSK are peptide phytohormones acting as growth factors.	The PSI family of nuclear proteins is required for growth in arabidopsis.2014 · DOI: 10.1007/s11103-014-0229-2

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035558 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006109 regulation of carbohydrate metabolic process Biological Process

GO:0009744 response to sucrose Biological Process

GO:0043434 response to peptide hormone Biological Process

GO:0045927 positive regulation of growth Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003746 translation elongation factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G30755

ath:AT1G34320

ath:AT5G08660

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.500

Rank 1 · TkA04G123760 · TK1151

Nucleus0.258

Rank 2 · TkA04G123760 · TK1151

Cell membrane0.248

Rank 3 · TkA04G123760 · TK1151

Mitochondrion0.084

Rank 4 · TkA04G123760 · TK1151

Golgi apparatus0.083

Rank 5 · TkA04G123760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30497WbpG_C5-15 aa

PF11961DUF347528-84 aa

PF26998DUF832332-72 aa

PF09548Spore_III_AB76-145 aa

PF30497WbpG_C115-194 aa

PF28878C3H64_C118-149 aa

PF26998DUF8323132-196 aa

PF10157BORCS6133-170 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G123760	`PF30497`	WbpG_C	5	15	0.22	12.8
TkA04G123760	`PF11961`	DUF3475	28	84	5e-23	81.6
TkA04G123760	`PF26998`	DUF8323	32	72	1.2	10.2
TkA04G123760	`PF09548`	Spore_III_AB	76	145	0.093	13.3
TkA04G123760	`PF30497`	WbpG_C	115	194	0.22	12.8
TkA04G123760	`PF28878`	C3H64_C	118	149	0.85	10.5
TkA04G123760	`PF26998`	DUF8323	132	196	1.2	10.2
TkA04G123760	`PF10157`	BORCS6	133	170	0.82	10.6
TkA04G123760	`PF28878`	C3H64_C	155	208	0.85	10.5
TkA04G123760	`PF05401`	NodS	156	241	0.057	14.0
TkA04G123760	`PF05003`	DUF668	161	163	4.2e-33	114.4
TkA04G123760	`PF05162`	Ribosomal_L41	188	197	0.63	10.7
TkA04G123760	`PF05003`	DUF668	364	455	4.2e-33	114.4
TkA04G123760	`PF11961`	DUF3475	461	472	5e-23	81.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P0DO24`	Arabidopsis thaliana	sp\|P0DO24\|PSI3_ARATH Protein PSK SIMULATOR 3	28.600%	Swiss-Prot	Low

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