TkA04G121510 | RubberDandelionOmics

Gene overview

TkA04G121510

Reference: TK1151 Chr: Chr04 Coordinates: 31560911-31562811 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1666 bp · TkA04G121510|TK1151|cDNA

TAAGACAAAGACATATAACAGAAGACCGAAATCATAAGCGAAGGTATAACCGATGTTAAAACAACTTCAAATTAGTTAATCCGTACTATACTTGGTAACTTTCTTAGACGTAGTATGGTGGCGGTGGTGTTTTGTAGTAGCACGAAGGTGGTGATGATGGAGAAGGTGGTGGTGGTGAAATCTAATAATAGGGTGGAGGAGGCGAAGGTGATGGAGGTGGAGGAGAGTTGTAGTAATATGGGGGAGGAGGTGAGGGTGAT...

CDS

Download CDS FASTA

810 bp · TkA04G121510|TK1151|CDS

ATGGTGGCGGTGGTGTTTTGTAGTAGCACGAAGGTGGTGATGATGGAGAAGGTGGTGGTGGTGAAATCTAATAATAGGGTGGAGGAGGCGAAGGTGATGGAGGTGGAGGAGAGTTGTAGTAATATGGGGGAGGAGGTGAGGGTGATGGGGGAGGTGGTGATTTGTAGTAATATGGCGGTGGGGGAGATGGTGATGGTGGTGGTGGGGACTTATACACGTAAGGTGGAGGTGGTGAAGGTGACAGTGGAGGTGGGGATTTA...

Protein

Download Protein FASTA

269 aa · TkA04G121510|TK1151|PROTEIN

MVAVVFCSSTKVVMMEKVVVVKSNNRVEEAKVMEVEESCSNMGEEVRVMGEVVICSNMAVGEMVMVVVGTYTRKVEVVKVTVEVGIYRRREVEVTVTVVVVIYKYKEEEVTVRVVVVICSNMVVGEMVMVVVGTCKHRVEVVTAMVEVAIYRHREMEVMVMVVIYKYKEEEVRARVVVVICSNMVVVEMVMVVVGTCKHRVEVVTAMVEVVIYRHKEVEETVMVVVVIYKYKEEEVTVRVVVVIYKYKEEEAMVMVVEEI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G121510`
TK1151 ID	TkA04G121510
OH-1004 ID	LXL04_035602
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	81.400
Protein coverage (%)	TK1151 15.985 / OH-1004 10.116 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA04G121510`
Location	Chr04:31560911-31562811 (-)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_035602` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.637

Rank 1 · TkA04G121510 · TK1151

Nucleus0.302

Rank 2 · TkA04G121510 · TK1151

Cell membrane0.121

Rank 3 · TkA04G121510 · TK1151

Mitochondrion0.053

Rank 4 · TkA04G121510 · TK1151

Golgi apparatus0.035

Rank 5 · TkA04G121510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17437DUF541622-53 aa

PF17437DUF541679-120 aa

PF27661DRC10_N127-160 aa

PF17437DUF5416160-183 aa

PF27661DRC10_N189-220 aa

PF17437DUF5416209-245 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G121510	`PF17437`	DUF5416	22	53	0.0049	17.4
TkA04G121510	`PF17437`	DUF5416	79	120	0.0049	17.4
TkA04G121510	`PF27661`	DRC10_N	127	160	2.0	9.3
TkA04G121510	`PF17437`	DUF5416	160	183	0.0049	17.4
TkA04G121510	`PF27661`	DRC10_N	189	220	2.0	9.3
TkA04G121510	`PF17437`	DUF5416	209	245	0.0049	17.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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