TkA04G116720 | RubberDandelionOmics

Gene overview

TkA04G116720

Reference: TK1151 Chr: Chr04 Coordinates: 30360988-30365839 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

957 bp · TkA04G116720|TK1151|cDNA

ATGCCGATCCTAAAAACACCAGATGGAGTTACCACAACAGCGGATCTTGGCCAGTTGCTAACGGCGGCGTGTATCAAAACGGGGCGGCCACAGATAGCGAGAAAGGCAATTGAACTGGCGGAGAGCCGGCTGTTGAAGGACGGATGGCCGGAATATTACGACGGAAAACTCAGGAGGTACGTCCGGAAGCAAGCGAGGAAGCATCAGACGTGGTCGATTGCGGGGTATTTGGTGGCGAAGATGTTGTTGGAAGATCTGTC...

CDS

Download CDS FASTA

957 bp · TkA04G116720|TK1151|CDS

ATGCCGATCCTAAAAACACCAGATGGAGTTACCACAACAGCGGATCTTGGCCAGTTGCTAACGGCGGCGTGTATCAAAACGGGGCGGCCACAGATAGCGAGAAAGGCAATTGAACTGGCGGAGAGCCGGCTGTTGAAGGACGGATGGCCGGAATATTACGACGGAAAACTCAGGAGGTACGTCCGGAAGCAAGCGAGGAAGCATCAGACGTGGTCGATTGCGGGGTATTTGGTGGCGAAGATGTTGTTGGAAGATCTGTC...

Protein

Download Protein FASTA

318 aa · TkA04G116720|TK1151|PROTEIN

MPILKTPDGVTTTADLGQLLTAACIKTGRPQIARKAIELAESRLLKDGWPEYYDGKLRRYVRKQARKHQTWSIAGYLVAKMLLEDLSHLGMILLEDDRQLKPIIKQVEQNDHRFWSYNQQQINRVGHTGTLDPMATGLFIVCIGKATKLVDRFQGMVKGYSGVLRLGEATSTLDADSGLLIWTVVYGCFFFTKWDKPKTLFNLLRDQVFTSLLFFFFLPKTLFSLEDRQNVVFRVTCSKGTYIQSLCADFAKALNSCAHM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G116720`
TK1151 ID	TkA04G116720
OH-1004 ID	LXL04_025699
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	86.900
Protein coverage (%)	TK1151 84.277 / OH-1004 84.691 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G116720

Location Chr04:30360988-30365839 (-)

Description Similar to INVD: Probable alkaline/neutral invertase D

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g22650`	Invertase that cleaves sucrose into glucose and fructose.	No verified direct reference in this release
`At4g34860`	Invertase that cleaves sucrose into glucose and fructose.	No verified direct reference in this release
`At1g35580`	Cytosolic invertase that specifically cleaves sucrose into glucose and fructose and is involved in the regulation of multiple tissue development including primary root elongation, root hair growth, leaf and silique development, and floral transition.	PIP5K9, an Arabidopsis phosphatidylinositol monophosphate kinase, interacts with a cytosolic invertase to negatively regulate sugar-mediated root growth.2007 · DOI: 10.1105/tpc.106.045658 Normal growth of Arabidopsis requires cytosolic invertase but not sucrose synthase.2009 · DOI: 10.1073/pnas.0900689106 Exploring the neutral invertase-oxidative stress defence connection in Arabidopsis thaliana.2011 · DOI: 10.1093/jxb/err069 Cytosolic invertases contribute to cellulose biosynthesis and influence carbon partitioning in seedlings of Arabidopsis thaliana.2018 · DOI: 10.1111/tpj.13909
`At4g09510`	Cytosolic invertase that may cleave sucrose into glucose and fructose, and that is involved in the regulation of root growth.	Normal growth of Arabidopsis requires cytosolic invertase but not sucrose synthase.2009 · DOI: 10.1073/pnas.0900689106

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0550600`	Cytosolic invertase that cleaves sucrose into glucose and fructose and is involved in the regulation of primary root elongation, lateral root formation, floral transition and pollen development.	OsCYT-INV1 for alkaline/neutral invertase is involved in root cell development and reproductivity in rice (Oryza sativa L.).2008 · DOI: 10.1007/s00425-008-0718-0

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025699 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0005987 sucrose catabolic process Biological Process

GO:0006520 amino acid metabolic process Biological Process

GO:0009555 pollen development Biological Process

GO:0010311 lateral root formation Biological Process

GO:0034214 protein hexamerization Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0048364 root development Biological Process

GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process

GO:0080022 primary root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT1G22650

ath:AT1G35580

ath:AT4G09510

ath:AT4G34860

dosa:Os02g0550600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.326

Rank 1 · TkA04G116720 · TK1151

Cytoplasm0.279

Rank 2 · TkA04G116720 · TK1151

Nucleus0.176

Rank 3 · TkA04G116720 · TK1151

Peroxisome0.140

Rank 4 · TkA04G116720 · TK1151

Plastid0.089

Rank 5 · TkA04G116720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12899Glyco_hydro_10019-85 aa

PF16198TruB_C_283-108 aa

PF01509TruB_N121-177 aa

PF01509TruB_N228-243 aa

PF16198TruB_C_2245-268 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G116720	`PF12899`	Glyco_hydro_100	19	85	5.5e-23	82.1
TkA04G116720	`PF16198`	TruB_C_2	83	108	0.007	17.2
TkA04G116720	`PF01509`	TruB_N	121	177	1e-21	78.6
TkA04G116720	`PF01509`	TruB_N	228	243	1e-21	78.6
TkA04G116720	`PF16198`	TruB_C_2	245	268	0.007	17.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4I2X9`	Arabidopsis thaliana	sp\|F4I2X9\|INVD_ARATH Probable alkaline/neutral invertase D	82.800%	Swiss-Prot	Low
`Q9SW48`	Arabidopsis thaliana	sp\|Q9SW48\|INVB_ARATH Probable alkaline/neutral invertase B	74.700%	Swiss-Prot	Low
`Q9LQF2`	Arabidopsis thaliana	sp\|Q9LQF2\|CINV1_ARATH Alkaline/neutral invertase CINV1	79.100%	Swiss-Prot	Low
`Q67XD9`	Arabidopsis thaliana	sp\|Q67XD9\|CINV2_ARATH Alkaline/neutral invertase CINV2	79.100%	Swiss-Prot	Low
`Q69T31`	Oryza sativa subsp. japonica	sp\|Q69T31\|CINV1_ORYSJ Cytosolic invertase 1	82.800%	Swiss-Prot	Low

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