TkA04G116640 | RubberDandelionOmics

Gene overview

TkA04G116640

Reference: TK1151 Chr: Chr04 Coordinates: 30324950-30331146 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1990 bp · TkA04G116640|TK1151|cDNA

CTGTTTTTCACTGTCCTACACGTACACAACACCATCTTGTCCGACCAGCGTGAAAATATAAATCACAAGCAACTTAGAGAGAGAAACAACACCAATAGGAGAGAGAAACACACACACACTCTCTCTCATACACGCTTAACCTCCCTTCCAAGCAAATCAAAATCCCTTTTTTCCCACTTGAAGAAGACGGGTTCCCTAGCCAGTATCGCCGGCTAGACACCAACCGGAAAAAATGGCGTCCACACGAAAGTGTCTTACTA...

CDS

Download CDS FASTA

1359 bp · TkA04G116640|TK1151|CDS

ATGGCGTCCACACGAAAGTGTCTTACTATGTTCATTGTTTTGAGTCAACTCGCTGCGGCTGCATTGTCTGCGAAACCCACCAACGCGACCACGCAAATCAACTCCAATTCTGTACTGGTGGCGTTGCTTGATTCTCATTACACCGAGCTGGCGGAGCTGGTGGAGAAGGCGCTCTTATTGCAGACGCTTGAAGAGGCTGTTTCGAATCATAATATCACCATTTTTGCTCCGAGAAATGAAGCTCTGGAGCGGGAACTTGA...

Protein

Download Protein FASTA

452 aa · TkA04G116640|TK1151|PROTEIN

MASTRKCLTMFIVLSQLAAAALSAKPTNATTQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVSNHNITIFAPRNEALERELDPEFKRFLLEPRNLGSLQTLLLHHIVPSRLGQSEWPEKSTRHDTLSEEPLHLSILDSMKLAGNAEVVRLDDVFRPDGIIHGISRLLIPKSVQQDFNNRRSLRAISAVKPEGAPEVDPRTNRLKKPALSVPAGSSPVLPIYYAMAPGPSLAPAPAPGPGGPRHHFDGEGQVKDFI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G116640`
TK1151 ID	TkA04G116640
OH-1004 ID	LXL04_012948
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	73.000
Protein coverage (%)	TK1151 94.469 / OH-1004 93.913 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G116640

Location Chr04:30324950-30331146 (+)

Description Similar to FLA17: Fasciclin-like arabinogalactan protein 17

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g06390`	May be a cell surface adhesion protein.	No verified direct reference in this release
`At3g11700`	May be a cell surface adhesion protein.	No verified direct reference in this release
`At2g35860`	May be a cell surface adhesion protein.	No verified direct reference in this release
`At3g52370`	May be a cell surface adhesion protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012948 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0099503 secretory vesicle Cellular Component

KEGG gene cross-reference

ath:AT2G35860

ath:AT3G11700

ath:AT3G52370

ath:AT5G06390

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.247

Rank 1 · TkA04G116640 · TK1151

Cell membrane0.232

Rank 2 · TkA04G116640 · TK1151

Endoplasmic reticulum0.129

Rank 3 · TkA04G116640 · TK1151

Lysosome / Vacuole0.120

Rank 4 · TkA04G116640 · TK1151

Plastid0.098

Rank 5 · TkA04G116640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02469Fasciclin5-34 aa

PF02469Fasciclin46-174 aa

PF02469Fasciclin286-401 aa

PF06821Ser_hydrolase289-316 aa

PF06821Ser_hydrolase331-385 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G116640	`PF02469`	Fasciclin	5	34	9.2e-31	107.3
TkA04G116640	`PF02469`	Fasciclin	46	174	9.2e-31	107.3
TkA04G116640	`PF02469`	Fasciclin	286	401	9.2e-31	107.3
TkA04G116640	`PF06821`	Ser_hydrolase	289	316	0.015	16.0
TkA04G116640	`PF06821`	Ser_hydrolase	331	385	0.015	16.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q66GR0`	Arabidopsis thaliana	sp\|Q66GR0\|FLA17_ARATH Fasciclin-like arabinogalactan protein 17	71.300%	Swiss-Prot	High
`Q93W32`	Arabidopsis thaliana	sp\|Q93W32\|FLA18_ARATH Fasciclin-like arabinogalactan protein 18	72.400%	Swiss-Prot	High
`Q8RWC5`	Arabidopsis thaliana	sp\|Q8RWC5\|FLA16_ARATH Fasciclin-like arabinogalactan protein 16	68.300%	Swiss-Prot	High
`Q9FT45`	Arabidopsis thaliana	sp\|Q9FT45\|FLA15_ARATH Fasciclin-like arabinogalactan protein 15	67.800%	Swiss-Prot	High

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