RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G116530
Reference: TK1151 Chr: Chr04 Coordinates: 30289020-30293281 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2167 bp · TkA04G116530|TK1151|cDNA

TAAAGGGAAACATTGTTGAACAGGGCGGCATTCACCATTGTTAATCCTTTGTTTTCTTGTGCGTTAACTGTTTCGTTACTGTTCTTTAGTGAGTACGATTTTTGTCGTTGATCTTCGGTTTCTTCGTTTGGTTTGATTGATTTATGAGTAGTTTTTGGATGTAATCGAGAAGTTTATTCCTCGTGACTAGTGTGCTGTGACTGTGAGTCGTTGTGTTGAAGAAATGGTGATGGAAGGAGGAGATACCGAGAGTTGTTGTA...

CDS

Download CDS FASTA

1677 bp · TkA04G116530|TK1151|CDS

ATGGTGATGGAAGGAGGAGATACCGAGAGTTGTTGTAGTAGCAGAGCATCGGAGGCGTCGCCGGCGGCGGTTGGGAGTAGGAAGCGGAGACCGAAGGTAGAGGTTTATCAGGAGGTTCTTCGCCGACTTCAAGAGTCGGATTGTGAAGAGGCATGTCAACCTGGTTTTGAAGATCAGCTATGGTCTCATTTCAATCGTCTTCCTGTTAGATATGCATTAGATGTGAATGTTGAGAGGGCACAAGAAGTTCTTATGCACAA...

Protein

Download Protein FASTA

558 aa · TkA04G116530|TK1151|PROTEIN

MVMEGGDTESCCSSRASEASPAAVGSRKRRPKVEVYQEVLRRLQESDCEEACQPGFEDQLWSHFNRLPVRYALDVNVERAQEVLMHKRLLHMAHDPNTRPAFEARLIQFHSSSDENGGESTSSYTKMKDGQISIHPVRQINHPPPAFGVASSFEGGNKVMSANQHLLRPLHEITISTNDKPKLLCKLTSLLSEIGLNIQEAHAFSTSDGYSLDVFVVYGWPYDEAEKLRDLLAKEIPRIEEIPWSRNSPFNELEKKNFQE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G116530
TK1151 IDTkA04G116530
OH-1004 IDLXL04_035678
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.300
Protein coverage (%)TK1151 99.821 / OH-1004 97.038
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G116530
LocationChr04:30289020-30293281 (-)
DescriptionSimilar to STY46: Serine/threonine-protein kinase STY46
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g38470 Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides).
A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins.2006 · DOI: 10.1074/jbc.m606580200
The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.2011 · DOI: 10.1104/pp.111.182774
At4g35780 Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides).
A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins.2006 · DOI: 10.1074/jbc.m606580200
The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.2011 · DOI: 10.1104/pp.111.182774
At2g17700 Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides).
A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins.2006 · DOI: 10.1074/jbc.m606580200
The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.2011 · DOI: 10.1104/pp.111.182774
At2g24360 Serine/threonine protein kinase that phosphorylates proteins on serine, threonine and tyrosine residues.
Genome-wide analysis and experimentation of plant serine/ threonine/tyrosine-specific protein kinases.2006 · DOI: 10.1007/s11103-005-4109-7
At1g62400 Serine/threonine/tyrosine kinase involved in the control of stomatal movement in response to CO(2). No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035678 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0007165 signal transduction Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0010119 regulation of stomatal movement Biological Process
GO:0010344 seed oilbody biogenesis Biological Process
GO:0045995 regulation of embryonic development Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0071244 cellular response to carbon dioxide Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0090333 regulation of stomatal closure Biological Process
GO:2000030 regulation of response to red or far red light Biological Process
KEGG gene cross-reference
ath:AT1G62400
ath:AT2G17700
ath:AT2G24360
ath:AT4G35780
ath:AT4G38470
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.588
Rank 1 · TkA04G116530 · TK1151
Nucleus0.300
Rank 2 · TkA04G116530 · TK1151
Cell membrane0.247
Rank 3 · TkA04G116530 · TK1151
Golgi apparatus0.080
Rank 4 · TkA04G116530 · TK1151
Lysosome / Vacuole0.061
Rank 5 · TkA04G116530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29659F26C11_3_mid10-19 aa
PF01636APH31-86 aa
PF01842ACT172-216 aa
PF13291ACT_4172-210 aa
PF07714PK_Tyr_Ser-Thr280-526 aa
PF00069Pkinase285-525 aa
PF03109ABC1288-327 aa
PF29659F26C11_3_mid294-319 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G116530PF29659F26C11_3_mid10192.98.6
TkA04G116530PF01636APH31860.2611.7
TkA04G116530PF01842ACT1722160.0009419.6
TkA04G116530PF13291ACT_41722100.1413.5
TkA04G116530PF07714PK_Tyr_Ser-Thr2805265.5e-69233.1
TkA04G116530PF00069Pkinase2855253.9e-54184.5
TkA04G116530PF03109ABC12883270.0003720.4
TkA04G116530PF29659F26C11_3_mid2943192.98.6
TkA04G116530PF01636APH3063340.2611.7
TkA04G116530PF03109ABC13514230.0003720.4
TkA04G116530PF17667Pkinase_fungal3874610.01614.7
TkA04G116530PF29659F26C11_3_mid3884062.98.6
TkA04G116530PF14531Kinase-like3894670.004117.1
TkA04G116530PF01636APH3964220.2611.7
TkA04G116530PF12330Haspin_kinase3984300.06313.0
TkA04G116530PF29659F26C11_3_mid4464702.98.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JTP5Arabidopsis thalianasp|F4JTP5|STY46_ARATH Serine/threonine-protein kinase STY4660.500%Swiss-ProtHigh
Q8RWL6Arabidopsis thalianasp|Q8RWL6|STY17_ARATH Serine/threonine-protein kinase STY1757.600%Swiss-ProtHigh
O22558Arabidopsis thalianasp|O22558|STY8_ARATH Serine/threonine-protein kinase STY858.000%Swiss-ProtHigh
Q9ZQ31Arabidopsis thalianasp|Q9ZQ31|STY13_ARATH Serine/threonine-protein kinase STY1345.600%Swiss-ProtLow
Q2MHE4Arabidopsis thalianasp|Q2MHE4|HT1_ARATH Serine/threonine/tyrosine-protein kinase HT138.800%Swiss-ProtLow

JBrowse

View in Genome Browser