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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G113610
Reference: TK1151 Chr: Chr04 Coordinates: 29475980-29489075 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

8442 bp · TkA04G113610|TK1151|cDNA

AAATGAGAAGAGGCGCATGCGACAGCGGCATACACCATTGCGTTTTGGTTTTGGCCACTCTCGTAATTGGCTTCCTAAAACCCTAAAACAAACACACCATCCGCCATAGTCCATCCATACAACACACTATCACTCCAACCTAACTTACAGCTCTAAATCGCTATCGATAAAACAAAGATCTTACAGCATTTCACAGTCGTTTGTAAGCTTGATCATCTTTCAAAATTGACTGAAAAAGATCAGTTATTTGATTAGCGAGC...

CDS

Download CDS FASTA

4881 bp · TkA04G113610|TK1151|CDS

ATGTACTTCGGATACTTTTCCTACATATGGATCCGATTTTACCTCTTCCTAGACTTAAAATGCTTTCAGGTTCTGTATCATGTGCTTGGGGCCATACCTGCCTATCAAGGATCTGTTGCACCAGCATTGAATGAGTTATGTCTTGGTTTGCAACCCGAAGAAGTAGCACCTGCTTTATCTGGTGTTTATGCGAAAGACCTTCATGTTAGACTAGCTTGTTTAAATGCTGCAAAGTGCATTCCAGCTATATCCAGCCGTTC...

Protein

Download Protein FASTA

1626 aa · TkA04G113610|TK1151|PROTEIN

MYFGYFSYIWIRFYLFLDLKCFQVLYHVLGAIPAYQGSVAPALNELCLGLQPEEVAPALSGVYAKDLHVRLACLNAAKCIPAISSRSVPQNVEIATSIWIALHDPEKSVAEVAEDLWDRYDHEFGTDYSGLFRALSHVNYNVRVAASDALAAVLDEYPDTLQESLATLFSLYIRDGGAGEDMIDSGWLGRQGIALALHAAADVLRTKDLPVVMTFLISRALADTNADVRGRMINAGIMIIDKHGKDNVSLLFPIFENYLN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G113610
TK1151 IDTkA04G113610
OH-1004 IDLXL04_035724
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)95.700
Protein coverage (%)TK1151 98.893 / OH-1004 61.136
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G113610
LocationChr04:29475980-29489075 (+)
DescriptionSimilar to ILA: Protein ILITYHIA
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g64790 Involved in immunity against bacterial infection and in non-host resistance. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035724 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006414 translational elongation Biological Process
GO:0006417 regulation of translation Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009627 systemic acquired resistance Biological Process
GO:0009682 induced systemic resistance Biological Process
GO:0034198 cellular response to amino acid starvation Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0045087 innate immune response Biological Process
GO:0072344 rescue of stalled cytosolic ribosome Biological Process
GO:0085020 protein K6-linked ubiquitination Biological Process
GO:0140469 GCN2-mediated signaling Biological Process
GO:0160127 protein-RNA covalent cross-linking repair Biological Process
KEGG gene cross-reference
ath:AT1G64790
hsa:10985
mmu:231659
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.586
Rank 1 · TkA04G113610 · TK1151
Nucleus0.276
Rank 2 · TkA04G113610 · TK1151
Golgi apparatus0.171
Rank 3 · TkA04G113610 · TK1151
Lysosome / Vacuole0.168
Rank 4 · TkA04G113610 · TK1151
Cell membrane0.130
Rank 5 · TkA04G113610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22958Ltn1_1st69-117 aa
PF13001ECM29_N84-120 aa
PF08713DNA_alkylation88-124 aa
PF26715HEAT_GCN1_290-285 aa
PF23271HEAT_GCN1129-164 aa
PF24714TOR1L1_N129-169 aa
PF25757TPR_DNAAF5129-155 aa
PF13001ECM29_N130-173 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G113610PF22958Ltn1_1st691173e-1867.0
TkA04G113610PF13001ECM29_N841201.4e-0524.9
TkA04G113610PF08713DNA_alkylation881240.01815.4
TkA04G113610PF26715HEAT_GCN1_2902852.3e-81273.6
TkA04G113610PF23271HEAT_GCN11291643.6e-97324.7
TkA04G113610PF24714TOR1L1_N1291691.2e-42146.9
TkA04G113610PF25757TPR_DNAAF51291552.5e-2486.7
TkA04G113610PF13001ECM29_N1301731.4e-0524.9
TkA04G113610PF02985HEAT1311541.6e-62202.2
TkA04G113610PF13646HEAT_21311621.5e-39134.9
TkA04G113610PF22958Ltn1_1st1311743e-1867.0
TkA04G113610PF12460MMS19_C1311709.8e-1245.3
TkA04G113610PF20926Htt_N-HEAT_11311602.1e-0835.4
TkA04G113610PF24173TPR_TTI1_N1311691.5e-0628.1
TkA04G113610PF25151TPR_Trm732_C1331563e-0937.7
TkA04G113610PF25780TPR_IPO51341694.7e-2899.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4I893Arabidopsis thalianasp|F4I893|ILA_ARATH Protein ILITYHIA74.200%Swiss-ProtHigh

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