TkA04G095220 | RubberDandelionOmics

Gene overview

TkA04G095220

Reference: TK1151 Chr: Chr04 Coordinates: 24798346-24799392 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

423 bp · TkA04G095220|TK1151|cDNA

ATGGAGAGTTTTCTTGCAAAGAAATATGTGAAAGATGCTCTTGGAGTTGGAGATCTGGATTTTGTTTATTGCAGTCCAACTGTATACCAGGCCACGCTTGTAGACTGGATGAGGAATCTTGAAGCTGGAATCCCTCACCTCCTTGAAGACGGGATTAAAATGATGGTATATGCTGGCGAATATAACCTCATCTGCAATTGGCTCGGTAATTCGAGATGGGTTCATGCAATGGAATGGAGTGATAAGAAAGAGTTTGGATC...

CDS

Download CDS FASTA

423 bp · TkA04G095220|TK1151|CDS

ATGGAGAGTTTTCTTGCAAAGAAATATGTGAAAGATGCTCTTGGAGTTGGAGATCTGGATTTTGTTTATTGCAGTCCAACTGTATACCAGGCCACGCTTGTAGACTGGATGAGGAATCTTGAAGCTGGAATCCCTCACCTCCTTGAAGACGGGATTAAAATGATGGTATATGCTGGCGAATATAACCTCATCTGCAATTGGCTCGGTAATTCGAGATGGGTTCATGCAATGGAATGGAGTGATAAGAAAGAGTTTGGATC...

Protein

Download Protein FASTA

140 aa · TkA04G095220|TK1151|PROTEIN

MESFLAKKYVKDALGVGDLDFVYCSPTVYQATLVDWMRNLEAGIPHLLEDGIKMMVYAGEYNLICNWLGNSRWVHAMEWSDKKEFGSSAETVLNTVNLGLQLYEILIDVGGEEEVYGVGSLIQWWWNFTQCAESFSVGSP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G095220`
TK1151 ID	TkA04G095220
OH-1004 ID	LXL04_013085
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	64.100
Protein coverage (%)	TK1151 65.000 / OH-1004 8.915 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G095220

Location Chr04:24798346-24799392 (-)

Description Similar to CBP3: Serine carboxypeptidase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10410`	Probable carboxypeptidase.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0114200`	Serine carboxypeptidase 3.	No verified direct reference in this release
`Os07g0479300`	Serine carboxypeptidase-like.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_013085 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT3G45010

dosa:Os02g0114200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.247

Rank 1 · TkA04G095220 · TK1151

Cytoplasm0.234

Rank 2 · TkA04G095220 · TK1151

Endoplasmic reticulum0.228

Rank 3 · TkA04G095220 · TK1151

Extracellular0.088

Rank 4 · TkA04G095220 · TK1151

Plastid0.079

Rank 5 · TkA04G095220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00450Peptidase_S102-91 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G095220	`PF00450`	Peptidase_S10	2	91	7.4e-16	59.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P32826`	Arabidopsis thaliana	sp\|P32826\|SCP49_ARATH Serine carboxypeptidase-like 49	71.100%	Swiss-Prot	Medium
`P37891`	Oryza sativa subsp. japonica	sp\|P37891\|CBP3_ORYSJ Serine carboxypeptidase 3	70.300%	Swiss-Prot	Medium
`P52712`	Oryza sativa subsp. japonica	sp\|P52712\|CBPX_ORYSJ Serine carboxypeptidase-like	70.000%	Swiss-Prot	Medium

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