TkA04G094240 | RubberDandelionOmics

Gene overview

TkA04G094240

Reference: TK1151 Chr: Chr04 Coordinates: 24509171-24526492 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1280 bp · TkA04G094240|TK1151|cDNA

AAACGTCACTTAATTTTTACCCACTCTCATATGCTCGTGTAACAACAAATGGCTTCCTTCTCAAGTGGAATAGAGTGCAATGGCGCGTGGTCGTGGATGTTAATCTCCTAAAAGTTTTTATCATTTCCTTGTTTTGCGAGTAGATCTCACAACAAACAGTGTATATATGGCGAGTTCCTGTTGGCCTGAGAGTTTACCAAGCAGCCGGATCAAAGCCATTGAAGAACTCACTCAAGGTCAACACTTAACAACCAAGCTCC...

CDS

Download CDS FASTA

978 bp · TkA04G094240|TK1151|CDS

ATGGCGAGTTCCTGTTGGCCTGAGAGTTTACCAAGCAGCCGGATCAAAGCCATTGAAGAACTCACTCAAGGTCAACACTTAACAACCAAGCTCCGGCGAATGCTCCGGCAACCGCAAAAGATTGACCCAGACGTCGACTCAGTTGACGATGTGGTGAAGCAGATCTTGGGGATGTTTGATAACACCCTTTCGATCTTGAACTCATCTAGCTTCAACGAAGTTGCTGATGTTCCGTCCGGTGATGTCAGATCTCCGACTCT...

Protein

Download Protein FASTA

325 aa · TkA04G094240|TK1151|PROTEIN

MASSCWPESLPSSRIKAIEELTQGQHLTTKLRRMLRQPQKIDPDVDSVDDVVKQILGMFDNTLSILNSSSFNEVADVPSGDVRSPTLSSLDDQKSEDYGESSKTVTPMKVKRGCYKRRKDSWTSIKIAPTLFDDGYAWRKYGQKVILNAKHQRNYYRCTHKTEQGCRATKQVQKTEDEPPQYKITYSGYHTCQNIRTPLIILDSDEDQKDNSFVLNFETPALNKNKQVDSCFPSTKHDQKENFPSLSFRNNQASPSDDHY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G094240`
TK1151 ID	TkA04G094240
OH-1004 ID	LXL04_035947
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.700
Protein coverage (%)	TK1151 99.077 / OH-1004 50.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G094240

Location Chr04:24509171-24526492 (-)

Description Similar to WRKY70: Probable WRKY transcription factor 70

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g40750`	Transcription factor.	WRKY54 and WRKY70 co-operate as negative regulators of leaf senescence in Arabidopsis thaliana.2012 · DOI: 10.1093/jxb/err450 EDS1 contributes to nonhost resistance of Arabidopsis thaliana against Erwinia amylovora.2012 · DOI: 10.1094/mpmi-05-11-0111 Defense-related transcription factors WRKY70 and WRKY54 modulate osmotic stress tolerance by regulating stomatal aperture in Arabidopsis.2013 · DOI: 10.1111/nph.12378 Arabidopsis WRKY46, WRKY54, and WRKY70 Transcription Factors Are Involved in Brassinosteroid-Regulated Plant Growth and Drought Responses.2017 · DOI: 10.1105/tpc.17.00364 WRKY70 and its homolog WRKY54 negatively modulate the cell wall-associated defenses to necrotrophic pathogens in Arabidopsis.2017 · DOI: 10.1371/journal.pone.0183731
`At5g22570`	Transcription factor.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0322900`	Transcriptional activator involved in defense responses against pathogens.	Rice WRKY45 plays a crucial role in benzothiadiazole-inducible blast resistance.2007 · DOI: 10.1105/tpc.106.046250 A pair of allelic WRKY genes play opposite roles in rice-bacteria interactions.2009 · DOI: 10.1104/pp.109.145623 Abscisic acid interacts antagonistically with salicylic acid signaling pathway in rice-Magnaporthe grisea interaction.2010 · DOI: 10.1094/mpmi-23-6-0791 OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice.2011 · DOI: 10.1093/jxb/err144 Rice WRKY45 plays important roles in fungal and bacterial disease resistance.2012 · DOI: 10.1111/j.1364-3703.2011.00732.x
`UniProt: B8AWM1`	Transcriptional activator involved in defense responses against pathogens.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035947 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000302 response to reactive oxygen species Biological Process

GO:0002215 defense response to nematode Biological Process

GO:0002229 defense response to oomycetes Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009624 response to nematode Biological Process

GO:0009625 response to insect Biological Process

GO:0009682 induced systemic resistance Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009751 response to salicylic acid Biological Process

KEGG gene cross-reference

ath:AT2G40750

ath:AT3G56400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.935

Rank 1 · TkA04G094240 · TK1151

Cytoplasm0.180

Rank 2 · TkA04G094240 · TK1151

Mitochondrion0.022

Rank 3 · TkA04G094240 · TK1151

Cell membrane0.022

Rank 4 · TkA04G094240 · TK1151

Endoplasmic reticulum0.012

Rank 5 · TkA04G094240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04500FLYWCH128-173 aa

PF03106WRKY133-193 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G094240	`PF04500`	FLYWCH	128	173	0.048	14.5
TkA04G094240	`PF03106`	WRKY	133	193	2.8e-23	82.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93WU8`	Arabidopsis thaliana	sp\|Q93WU8\|WRK54_ARATH Probable WRKY transcription factor 54	39.500%	Swiss-Prot	Medium
`Q8GWF1`	Arabidopsis thaliana	sp\|Q8GWF1\|WRK38_ARATH Probable WRKY transcription factor 38	33.300%	Swiss-Prot	Medium
`Q5W6D6`	Oryza sativa subsp. japonica	sp\|Q5W6D6\|WR451_ORYSJ Transcription factor WRKY45-1	32.300%	Swiss-Prot	Medium
`B8AWM1`	Oryza sativa subsp. indica	sp\|B8AWM1\|WK452_ORYSI Transcription factor WRKY45-2	56.500%	Swiss-Prot	Low

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