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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G085260
Reference: TK1151 Chr: Chr04 Coordinates: 22351190-22353149 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1203 bp · TkA04G085260|TK1151|cDNA

GTTGGAGTCTTGAAATGTGTGATGAGGGTTTTGCTGAAGATGGGAAAGCATATTTTTGTCAACATGCCTTTTATATATATTCAACTACACTCATATTCCCTTTAAATTGCTCCCATTCTCTTCTCTCTCACTACTATTCCCTTCTTTCTCTCTGTAAAAGGTGTTGTTTGTGTTGTTTGACAATGCCTGCAGAGGTGATGCCTGAGAAAACCTTCCATGGGATGTCTGGCCATGTAAAAGAAACCACTTCCGTCTTCCCT...

CDS

Download CDS FASTA

1086 bp · TkA04G085260|TK1151|CDS

ATGTGTGATGAGGGTTTTGCTGAAGATGGGAAAGCATATTTTTGTCAACATGCCTTTTATATATATTCAACTACACTCATATTCCCTTTAAATTGCTCCCATTCTCTTCTCTCTCACTACTATTCCCTTCTTTCTCTCTGTAAAAGGTGTTGTTTGTGTTGTTTGACAATGCCTGCAGAGGTGATGCCTGAGAAAACCTTCCATGGGATGTCTGGCCATGTAAAAGAAACCACTTCCGTCTTCCCTAGAAGGTTGGAGGG...

Protein

Download Protein FASTA

361 aa · TkA04G085260|TK1151|PROTEIN

MCDEGFAEDGKAYFCQHAFYIYSTTLIFPLNCSHSLLSHYYSLLSLCKRCCLCCLTMPAEVMPEKTFHGMSGHVKETTSVFPRRLEGKIAIVTGGAGGIGSATVRLFVKHGAKVVIADINDERGLALSTSLSPLATYVHCDVSLESDVRNLIDSTVGCYGRIDIMFNNAGVLGNQSKHKSIVNFDVDEFDRVMSVNVRGVALGIKHAARVMIPRGSGCIISTASVASVMGGMGPHAYTASKHAIVGLTKNTACELGGHGI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G085260
TK1151 IDTkA04G085260
OH-1004 IDLXL04_032843
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)48.900
Protein coverage (%)TK1151 76.731 / OH-1004 94.815
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G085260
LocationChr04:22351190-22353149 (+)
DescriptionSimilar to Secoisolariciresinol dehydrogenase (Fragment)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g51680 Short-chain dehydrogenase reductase 2a. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032843 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009688 abscisic acid biosynthetic process Biological Process
GO:0009807 lignan biosynthetic process Biological Process
GO:0016114 terpenoid biosynthetic process Biological Process
GO:0046211 (+)-camphor biosynthetic process Biological Process
GO:0005829 cytosol Cellular Component
GO:0004022 alcohol dehydrogenase (NAD+) activity Molecular Function
GO:0010301 xanthoxin dehydrogenase (NAD+) activity Molecular Function
GO:0016491 oxidoreductase activity Molecular Function
GO:0047500 (+)-borneol dehydrogenase activity Molecular Function
GO:0102960 momilactone-A synthase [NAD(P)H] activity Molecular Function
GO:0120529 secoisolariciresinol dehydrogenase activity Molecular Function
KEGG gene cross-reference
dosa:Os04g0179200
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.485
Rank 1 · TkA04G085260 · TK1151
Nucleus0.221
Rank 2 · TkA04G085260 · TK1151
Peroxisome0.219
Rank 3 · TkA04G085260 · TK1151
Mitochondrion0.136
Rank 4 · TkA04G085260 · TK1151
Plastid0.059
Rank 5 · TkA04G085260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01175Urocanase80-123 aa
PF00106adh_short88-279 aa
PF03807F420_oxidored88-137 aa
PF08659KR91-247 aa
PF010733Beta_HSD91-155 aa
PF01370Epimerase91-155 aa
PF05368NmrA91-152 aa
PF16363GDP_Man_Dehyd91-122 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G085260PF01175Urocanase801230.3511.2
TkA04G085260PF00106adh_short882794e-49167.5
TkA04G085260PF03807F420_oxidored881370.04915.0
TkA04G085260PF08659KR912473.3e-1144.2
TkA04G085260PF010733Beta_HSD911553e-0523.9
TkA04G085260PF01370Epimerase911550.0004520.4
TkA04G085260PF05368NmrA911520.01315.9
TkA04G085260PF16363GDP_Man_Dehyd911220.04513.9
TkA04G085260PF027373HCDH_N911230.07413.7
TkA04G085260PF03435Sacchrp_dh_NADP951470.001719.4
TkA04G085260PF13561adh_short_C2963063.4e-56191.2
TkA04G085260PF01175Urocanase2222330.3511.2
TkA04G085260PF05368NmrA2873580.01315.9
TkA04G085260PF01175Urocanase3113320.3511.2
TkA04G085260PF13561adh_short_C23173503.4e-56191.2
TkA04G085260PF01370Epimerase3223430.0004520.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SCU0Arabidopsis thalianasp|Q9SCU0|SDR2A_ARATH Short-chain dehydrogenase reductase 2a63.700%Swiss-ProtHigh

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