TkA04G084920 | RubberDandelionOmics

Gene overview

TkA04G084920

Reference: TK1151 Chr: Chr04 Coordinates: 22254984-22256543 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1425 bp · TkA04G084920|TK1151|cDNA

ATGAAGTTGTGGCCTTTTAGGGTCATAGAAGGAACTGCCGACACACCAAAGATTGTCGTCTCCTACAAAGGTGAAGAAAAAGAGTTTTTGGCTGAAGAAATTTCATCCATGATTCTTAACAAGATGAAAGAAACTGCGGACGCATACCTTGGCAAATCTGTGAAAAATGCTGTGGTAACAGTCCCAGCTTACTTTAACGACTCTCAACGTCAAGCAACAAAGGATGCTGGTGCTATTGCTGGCCTTAATGTCTTGCGGAT...

CDS

Download CDS FASTA

1425 bp · TkA04G084920|TK1151|CDS

ATGAAGTTGTGGCCTTTTAGGGTCATAGAAGGAACTGCCGACACACCAAAGATTGTCGTCTCCTACAAAGGTGAAGAAAAAGAGTTTTTGGCTGAAGAAATTTCATCCATGATTCTTAACAAGATGAAAGAAACTGCGGACGCATACCTTGGCAAATCTGTGAAAAATGCTGTGGTAACAGTCCCAGCTTACTTTAACGACTCTCAACGTCAAGCAACAAAGGATGCTGGTGCTATTGCTGGCCTTAATGTCTTGCGGAT...

Protein

Download Protein FASTA

474 aa · TkA04G084920|TK1151|PROTEIN

MKLWPFRVIEGTADTPKIVVSYKGEEKEFLAEEISSMILNKMKETADAYLGKSVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDNKSDISSKINVLVFDLGGGTFDVSILTIEEGGSTLEVKAVAGDTHLGGEDFDSQMVDHCAREFKRKWNKDLTGNKRALGRLRCACEKAKRILSCNMLTSIEIDGLHEGIDFSMKFSRAKFEELNMDFFIKCIETLEACLSDAKMEKSCVNEVILVGGST...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G084920`
TK1151 ID	TkA04G084920
OH-1004 ID	LXL04_036010
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	71.300
Protein coverage (%)	TK1151 99.367 / OH-1004 36.402 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G084920

Location Chr04:22254984-22256543 (-)

Description Similar to HSP70: Heat shock cognate 70 kDa protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g02500`	In cooperation with other chaperones, Hsp70s are key components that facilitate folding of de novo synthesized proteins, assist translocation of precursor proteins into organelles, and are responsible for degradation of damaged protein under stress conditions (Probable).	Physiological and molecular assessment of altered expression of Hsc70-1 in Arabidopsis. Evidence for pleiotropic consequences.2003 · DOI: 10.1104/pp.102.019398 Interaction between SGT1 and cytosolic/nuclear HSC70 chaperones regulates Arabidopsis immune responses.2007 · DOI: 10.1105/tpc.107.051896 WPP-domain proteins mimic the activity of the HSC70-1 chaperone in preventing mistargeting of RanGAP1-anchoring protein WIT1.2009 · DOI: 10.1104/pp.109.143404 The cytosolic/nuclear HSC70 and HSP90 molecular chaperones are important for stomatal closure and modulate abscisic acid-dependent physiological responses in Arabidopsis.2011 · DOI: 10.1104/pp.111.174425

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036010 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006457 protein folding Biological Process

GO:0006950 response to stress Biological Process

GO:0009408 response to heat Biological Process

GO:0009615 response to virus Biological Process

GO:0010187 negative regulation of seed germination Biological Process

GO:0010286 heat acclimation Biological Process

GO:0042026 protein refolding Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0090332 stomatal closure Biological Process

GO:0098542 defense response to other organism Biological Process

KEGG gene cross-reference

ath:AT5G02500

sly:101247772

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.630

Rank 1 · TkA04G084920 · TK1151

Nucleus0.244

Rank 2 · TkA04G084920 · TK1151

Mitochondrion0.098

Rank 3 · TkA04G084920 · TK1151

Endoplasmic reticulum0.094

Rank 4 · TkA04G084920 · TK1151

Cell membrane0.079

Rank 5 · TkA04G084920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00012HSP701-267 aa

PF06723MreB_Mbl37-269 aa

PF04010DUF35744-73 aa

PF26581WIT1_2_N224-248 aa

PF00012HSP70278-471 aa

PF04010DUF357371-419 aa

PF07851TMEM120A-B384-462 aa

PF26154DUF8042394-458 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G084920	`PF00012`	HSP70	1	267	3e-150	502.1
TkA04G084920	`PF06723`	MreB_Mbl	37	269	1.3e-11	44.7
TkA04G084920	`PF04010`	DUF357	44	73	0.056	14.2
TkA04G084920	`PF26581`	WIT1_2_N	224	248	0.54	10.7
TkA04G084920	`PF00012`	HSP70	278	471	3e-150	502.1
TkA04G084920	`PF04010`	DUF357	371	419	0.056	14.2
TkA04G084920	`PF07851`	TMEM120A-B	384	462	3.4	7.6
TkA04G084920	`PF26154`	DUF8042	394	458	0.21	12.6
TkA04G084920	`PF26581`	WIT1_2_N	401	454	0.54	10.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P22953`	Arabidopsis thaliana	sp\|P22953\|HS701_ARATH Heat shock 70 kDa protein 1	56.300%	Swiss-Prot	High

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