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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G068420
Reference: TK1151 Chr: Chr04 Coordinates: 18145664-18146602 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

906 bp · TkA04G068420|TK1151|cDNA

ATGGCGTCTAAGCTCTTTCTTCCCTTTTCATGTATCTTTTTTCTTGCTTCCTTTGTGCTTCCGCCACATGGGTTATTGGTTAATAGCACGAACCCGTCACCTTTTGGGTTTCTTAAAGCCATGAAAGGGTGTCGTAAGGGCGAGAAACTGAGTGGCATTCGTGACCTGAAACTCTATCTTGCTCGTTTCAGATACCTAAACTACCAGAAAACCACTAATGGGCAAGATCTCGATGAGGATCATTTCGACGAGGAGCTTGA...

CDS

Download CDS FASTA

906 bp · TkA04G068420|TK1151|CDS

ATGGCGTCTAAGCTCTTTCTTCCCTTTTCATGTATCTTTTTTCTTGCTTCCTTTGTGCTTCCGCCACATGGGTTATTGGTTAATAGCACGAACCCGTCACCTTTTGGGTTTCTTAAAGCCATGAAAGGGTGTCGTAAGGGCGAGAAACTGAGTGGCATTCGTGACCTGAAACTCTATCTTGCTCGTTTCAGATACCTAAACTACCAGAAAACCACTAATGGGCAAGATCTCGATGAGGATCATTTCGACGAGGAGCTTGA...

Protein

Download Protein FASTA

301 aa · TkA04G068420|TK1151|PROTEIN

MASKLFLPFSCIFFLASFVLPPHGLLVNSTNPSPFGFLKAMKGCRKGEKLSGIRDLKLYLARFRYLNYQKTTNGQDLDEDHFDEELEAALKSYQVYYHLNATGTLDEPTVSKMVIPRCGFPDKETHHHTNNNSLHTVSHYRFFPGRPKWPRGKRHLTYGFGSRFPTRFMPPIARAFRKWDTASRYFTFSRARSYRSADLKISFARGSHGDGNPFDGPGGVLAHAFAPSDGRLHYDADDRWSVGAVRNAYDVETLALHEIG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G068420
TK1151 IDTkA04G068420
OH-1004 IDLXL04_036191
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)96.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G068420
LocationChr04:18145664-18146602 (-)
DescriptionSimilar to 3MMP: Metalloendoproteinase 3-MMP
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g24140 Matrix metalloproteinases (MMPs) or matrixins may play a role in the degradation and remodeling of the extracellular matrix (ECM) during development or in response to stresses (By similarity). No verified direct reference in this release
At1g70170 Matrix metalloproteinases (MMPs) or matrixins may play a role in the degradation and remodeling of the extracellular matrix (ECM) during development or in response to stresses (By similarity). No verified direct reference in this release
At1g59970 Matrix metalloproteinases (MMPs) or matrixins may play a role in the degradation and remodeling of the extracellular matrix (ECM) during development or in response to stresses (By similarity). No verified direct reference in this release
At4g16640 Matrix metalloproteinases (MMPs) or matrixins may play a role in the degradation and remodeling of the extracellular matrix (ECM) during development or in response to stresses. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036191 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006508 proteolysis Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0030198 extracellular matrix organization Biological Process
GO:0030574 collagen catabolic process Biological Process
GO:0046686 response to cadmium ion Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0080186 developmental vegetative growth Biological Process
GO:1900056 negative regulation of leaf senescence Biological Process
GO:2000028 regulation of photoperiodism, flowering Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G24140
ath:AT1G59970
ath:AT1G70170
ath:AT4G16640
gmx:547880
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.705
Rank 1 · TkA04G068420 · TK1151
Cell membrane0.065
Rank 2 · TkA04G068420 · TK1151
Endoplasmic reticulum0.063
Rank 3 · TkA04G068420 · TK1151
Cytoplasm0.054
Rank 4 · TkA04G068420 · TK1151
Lysosome / Vacuole0.041
Rank 5 · TkA04G068420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01471PG_binding_152-113 aa
PF13582Reprolysin_356-92 aa
PF00413Peptidase_M1066-102 aa
PF00413Peptidase_M10155-300 aa
PF12388Peptidase_M57217-272 aa
PF10462Peptidase_M66241-269 aa
PF13688Reprolysin_5241-268 aa
PF13583Reprolysin_4246-269 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G068420PF01471PG_binding_1521137.4e-0833.2
TkA04G068420PF13582Reprolysin_356920.008417.3
TkA04G068420PF00413Peptidase_M10661021.5e-42145.9
TkA04G068420PF00413Peptidase_M101553001.5e-42145.9
TkA04G068420PF12388Peptidase_M572172720.007216.8
TkA04G068420PF10462Peptidase_M662412690.1611.6
TkA04G068420PF13688Reprolysin_52412680.1712.8
TkA04G068420PF13583Reprolysin_42462690.04814.0
TkA04G068420PF13582Reprolysin_32512680.008417.3
TkA04G068420PF16313DUF49532532680.1412.1
TkA04G068420PF12044Metallopep2552780.07212.4
TkA04G068420PF07998Peptidase_M542562770.1912.4
TkA04G068420PF12388Peptidase_M572732990.007216.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q5XF51Arabidopsis thalianasp|Q5XF51|3MMP_ARATH Metalloendoproteinase 3-MMP39.600%Swiss-ProtMedium
O04529Arabidopsis thalianasp|O04529|2MMP_ARATH Metalloendoproteinase 2-MMP40.100%Swiss-ProtMedium
Q9ZUJ5Arabidopsis thalianasp|Q9ZUJ5|5MMP_ARATH Metalloendoproteinase 5-MMP39.400%Swiss-ProtMedium
O23507Arabidopsis thalianasp|O23507|1MMP_ARATH Metalloendoproteinase 1-MMP43.200%Swiss-ProtMedium

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