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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G063190
Reference: TK1151 Chr: Chr04 Coordinates: 16858273-16861112 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2255 bp · TkA04G063190|TK1151|cDNA

ATGGTGTGGTGTTGTTAACATGTCCAAGTCTTCATAAATATCATCGGAGGCCGATAGCAACATATATATGTTTGTGATGGGGACCTAACCAAAAATATGAGAAGCCTTAGGGGCATTTATGCCATTATTACAAAGATGGGGGGAATGTATGATTATTCTCAGAAGGCAAAGTACGGAGCTCCAGCGTTTAGGGTTTAAGAGCAAGAAGGGTTTTGTGTGTTCGTTGGTTCTCATTTCTCTACTCGTATAGCGTCTGTATT...

CDS

Download CDS FASTA

1821 bp · TkA04G063190|TK1151|CDS

ATGTGGGCAATTCGAAAAGCCTCCGTCCGTATCAAGTCCCAGCCTTTTTCATCATTAACTTTCCGTGCTTCAATCACTAAATTTGAAACATCAAGTTCTAGTTACAAGGATACCACCGTCCTCAGTGATCCACCACCACCACTTCCATCCGCTAAATCCCTACCCTTAAATAGATTCTATTCCCAGACACATAGCAATCAAACCTTTTTCATTGGGAACCATAGGTTTTCCTCACAGGCTGGAAAAGAGAGCAGTGAGGA...

Protein

Download Protein FASTA

606 aa · TkA04G063190|TK1151|PROTEIN

MWAIRKASVRIKSQPFSSLTFRASITKFETSSSSYKDTTVLSDPPPPLPSAKSLPLNRFYSQTHSNQTFFIGNHRFSSQAGKESSEDEDDDLNASITDSELISEAEDDDIVVEEPQNELDLSDNEEEAVETKSKGKRGTSGLFKAMMNSSSNSAKQALDKWVEEGNEPSKFEISGAMFELRRRRMFGKALQLSEWLEGQEKVEFAERDYSSRVDLIAKTRGLQKAESYIEKIPEPFRGEVIYRTLLANYVQQTNTKKAEQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G063190
TK1151 IDTkA04G063190
OH-1004 IDLXL04_036211
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)100.000
Protein coverage (%)TK1151 76.073 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G063190
LocationChr04:16858273-16861112 (+)
DescriptionSimilar to At1g80270: Pentatricopeptide repeat-containing protein At1g80270, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g15480 Pentatricopeptide repeat-containing protein At1g15480, mitochondrial. No verified direct reference in this release
At1g80270 Pentatricopeptide repeat-containing protein At1g80270, mitochondrial. No verified direct reference in this release
At3g15590 Pentatricopeptide repeat-containing protein At3g15590, mitochondrial. No verified direct reference in this release
At4g21705 Pentatricopeptide repeat-containing protein At4g21705, mitochondrial. No verified direct reference in this release
At4g01990 Pentatricopeptide repeat-containing protein At4g01990, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036211 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000963 mitochondrial RNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0032543 mitochondrial translation Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:1902775 mitochondrial large ribosomal subunit assembly Biological Process
GO:1903427 negative regulation of reactive oxygen species biosynthetic process Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005761 mitochondrial ribosome Cellular Component
GO:0005840 ribosome Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:1990904 ribonucleoprotein complex Cellular Component
KEGG gene cross-reference
ath:AT1G15480
ath:AT1G60770
ath:AT1G80270
ath:AT3G15590
ath:AT4G02820
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.785
Rank 1 · TkA04G063190 · TK1151
Plastid0.164
Rank 2 · TkA04G063190 · TK1151
Nucleus0.061
Rank 3 · TkA04G063190 · TK1151
Cytoplasm0.037
Rank 4 · TkA04G063190 · TK1151
Cell membrane0.012
Rank 5 · TkA04G063190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08432Vfa183-185 aa
PF25064ARM_TT21_5th166-184 aa
PF19189Mtf2191-278 aa
PF17177PPR_long201-273 aa
PF29931TPR_FimV213-270 aa
PF14689SPOB_a223-232 aa
PF24760TPR_IF140_C231-265 aa
PF13041PPR_2239-281 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G063190PF08432Vfa1831850.611.1
TkA04G063190PF25064ARM_TT21_5th1661840.0913.8
TkA04G063190PF19189Mtf21912780.1612.3
TkA04G063190PF17177PPR_long2012734.4e-1246.6
TkA04G063190PF29931TPR_FimV2132700.3511.8
TkA04G063190PF14689SPOB_a2232320.07513.4
TkA04G063190PF24760TPR_IF140_C2312650.1713.0
TkA04G063190PF13041PPR_22392811.2e-1970.8
TkA04G063190PF01535PPR2402686.6e-2070.6
TkA04G063190PF12854PPR_12402658.7e-0626.1
TkA04G063190PF13812PPR_32412677.6e-2174.7
TkA04G063190PF25058ARM_TT212412640.01216.3
TkA04G063190PF23276TPR_242422804.9e-0936.9
TkA04G063190PF29070MSC6_N2463671.2e-0938.5
TkA04G063190PF17177PPR_long2483974.4e-1246.6
TkA04G063190PF14559TPR_192492630.002918.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9XI21Arabidopsis thalianasp|Q9XI21|PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480, mitochondrial55.900%Swiss-ProtHigh
Q9C977Arabidopsis thalianasp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270, mitochondrial57.000%Swiss-ProtHigh
Q9LRP6Arabidopsis thalianasp|Q9LRP6|PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590, mitochondrial51.400%Swiss-ProtHigh
Q84JR3Arabidopsis thalianasp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705, mitochondrial25.900%Swiss-ProtLow
Q93WC5Arabidopsis thalianasp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990, mitochondrial26.600%Swiss-ProtLow

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