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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G060590
Reference: TK1151 Chr: Chr04 Coordinates: 16166132-16171955 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3656 bp · TkA04G060590|TK1151|cDNA

AAGTTATTACCGGTTTGATATCCTCCAACTCTCAAAGGGTTTTAAACAAAAACCATTTATAAACCCTACACTGAAACTCCCTCCCGGAGATACGGCCATCCGACTATGAAAAAACAACGGCCACAATCAACCGAAGAATCCATGGAAGAATCCACTGACGCTACTACCTCATTCACCGGAGATTCTGATGTATGCCAACAACTCCTAGACCGTTACGGCAAATCCGCCGCACCTCAACACACCCACCTCTGCGCAACTGC...

CDS

Download CDS FASTA

3312 bp · TkA04G060590|TK1151|CDS

ATGAAAAAACAACGGCCACAATCAACCGAAGAATCCATGGAAGAATCCACTGACGCTACTACCTCATTCACCGGAGATTCTGATGTATGCCAACAACTCCTAGACCGTTACGGCAAATCCGCCGCACCTCAACACACCCACCTCTGCGCAACTGCTGCCGCTACCCGTTCTATCATACAATCTGAATCCCTGCCCCTCACTCCCCTCTCTTACTTCGCTGCCACCATTGAAGCCCTCTCCGATAGCTCCAAAACAACCAA...

Protein

Download Protein FASTA

1103 aa · TkA04G060590|TK1151|PROTEIN

MKKQRPQSTEESMEESTDATTSFTGDSDVCQQLLDRYGKSAAPQHTHLCATAAATRSIIQSESLPLTPLSYFAATIEALSDSSKTTNDADAVSALSSFLAIVLPLVPEKSIATSKAAEAVEIVVELVDNPCEGLPVSSVRALVKCLGVLLEFCDLDDWESVQLGFQTLLKYSIDKRPKVRKCSQDCVVKVFKSFQSPNVKESASKLVLKSFKTYMSLAMETVASRSADGCNDDKLSKWEHLEVLHMLNLLNFLVPSLPSK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G060590
TK1151 IDTkA04G060590
OH-1004 IDLXL04_036251
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G060590
LocationChr04:16166132-16171955 (+)
DescriptionSimilar to RRP12: RRP12-like protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036251 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process
GO:0042254 ribosome biogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005840 ribosome Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0030686 90S preribosome Cellular Component
GO:0030688 preribosome, small subunit precursor Cellular Component
GO:0031965 nuclear membrane Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
dre:563195
gga:423845
hsa:23223
mmu:107094
sce:YPL012W
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.864
Rank 1 · TkA04G060590 · TK1151
Cytoplasm0.150
Rank 2 · TkA04G060590 · TK1151
Cell membrane0.046
Rank 3 · TkA04G060590 · TK1151
Endoplasmic reticulum0.039
Rank 4 · TkA04G060590 · TK1151
Golgi apparatus0.017
Rank 5 · TkA04G060590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25772HEAT_RRP12_N17-297 aa
PF24987HEAT_EF3_N91-118 aa
PF23271HEAT_GCN1110-199 aa
PF24714TOR1L1_N136-188 aa
PF02985HEAT141-153 aa
PF02985HEAT166-192 aa
PF24987HEAT_EF3_N167-201 aa
PF08161RRP12_HEAT258-318 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G060590PF25772HEAT_RRP12_N172971e-95320.9
TkA04G060590PF24987HEAT_EF3_N911180.09113.4
TkA04G060590PF23271HEAT_GCN11101990.0001422.7
TkA04G060590PF24714TOR1L1_N1361880.0001222.3
TkA04G060590PF02985HEAT1411530.02315.7
TkA04G060590PF02985HEAT1661920.02315.7
TkA04G060590PF24987HEAT_EF3_N1672010.09113.4
TkA04G060590PF08161RRP12_HEAT2583181.8e-56192.4
TkA04G060590PF24987HEAT_EF3_N2663290.09113.4
TkA04G060590PF23271HEAT_GCN13083080.0001422.7
TkA04G060590PF25772HEAT_RRP12_N3554521e-95320.9
TkA04G060590PF08161RRP12_HEAT3646521.8e-56192.4
TkA04G060590PF24714TOR1L1_N3944310.0001222.3
TkA04G060590PF24987HEAT_EF3_N3984310.09113.4
TkA04G060590PF24987HEAT_EF3_N5175420.09113.4
TkA04G060590PF23271HEAT_GCN15295530.0001422.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

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