TkA04G058490 | RubberDandelionOmics

Gene overview

TkA04G058490

Reference: TK1151 Chr: Chr04 Coordinates: 15593108-15594035 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

778 bp · TkA04G058490|TK1151|cDNA

ATTTTATCAAGTATAACATGTCAATGTCAAACAATAACGAAGGTGAAATAAGTAAATTCTAAAAAATAAAGTTGGTGAGATTCAAGTTTCAGGATCTTGTTGAACGGATTATCTCCGATGACACTCAAGACTAACAGTAACAGATCGAGAGAGAAATAGAATGGGAATTGAAGATAGAGTCAACGTTCTGTACAAAGATGTATTGCCGTTTGCAGGAATGGTGGCGGTGGAGTTGATGGTCGTAGGAGGCAACACCCTCT...

CDS

Download CDS FASTA

411 bp · TkA04G058490|TK1151|CDS

ATGGGAATTGAAGATAGAGTCAACGTTCTGTACAAAGATGTATTGCCGTTTGCAGGAATGGTGGCGGTGGAGTTGATGGTCGTAGGAGGCAACACCCTCTATAAGTCAGCATCTGTTAATGGAATCAACTCATATGTCTTCACCTTCTATGTATTCTTCATCGGCTTCATCTTCATCTTACCTCTACCTCTCATCCTCCACAGAACAACAAGCAGTAATCCGCCAATCCAATTCTCCATTATTGCGAAAATATTCATGCT...

Protein

Download Protein FASTA

136 aa · TkA04G058490|TK1151|PROTEIN

MGIEDRVNVLYKDVLPFAGMVAVELMVVGGNTLYKSASVNGINSYVFTFYVFFIGFIFILPLPLILHRTTSSNPPIQFSIIAKIFMLSVLMYLSQVFGYIGLQYGSPTLSSIMSNLSPAFTFVLAFFFRSDYRDGL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G058490`
TK1151 ID	TkA04G058490
OH-1004 ID	LXL04_036279
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	96.200
Protein coverage (%)	TK1151 96.324 / OH-1004 37.861 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G058490

Location Chr04:15593108-15594035 (-)

Description Similar to At5g40230: WAT1-related protein At5g40230

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g15540`	WAT1-related protein At4g15540.	No verified direct reference in this release
`At3g28050`	WAT1-related protein At3g28050.	No verified direct reference in this release
`At5g40210`	WAT1-related protein At5g40210.	No verified direct reference in this release
`At2g39510`	WAT1-related protein At2g39510.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036279 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005886 plasma membrane Cellular Component

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT3G28050

ath:AT4G15540

ath:AT5G40210

ath:AT5G40230

ath:AT5G40240

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.414

Rank 1 · TkA04G058490 · TK1151

Endoplasmic reticulum0.243

Rank 2 · TkA04G058490 · TK1151

Cell membrane0.196

Rank 3 · TkA04G058490 · TK1151

Golgi apparatus0.094

Rank 4 · TkA04G058490 · TK1151

Cytoplasm0.073

Rank 5 · TkA04G058490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF253236TM_PilS24-94 aa

PF00892EamA27-128 aa

PF06570DUF112937-132 aa

PF28931DLT1_N46-81 aa

PF03151TPT48-131 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G058490	`PF25323`	6TM_PilS	24	94	0.025	15.0
TkA04G058490	`PF00892`	EamA	27	128	9.1e-10	39.7
TkA04G058490	`PF06570`	DUF1129	37	132	1.5	9.1
TkA04G058490	`PF28931`	DLT1_N	46	81	0.029	15.0
TkA04G058490	`PF03151`	TPT	48	131	0.0049	17.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4JK59`	Arabidopsis thaliana	sp\|F4JK59\|WTR33_ARATH WAT1-related protein At4g15540	47.500%	Swiss-Prot	Medium
`Q94JU2`	Arabidopsis thaliana	sp\|Q94JU2\|WTR18_ARATH WAT1-related protein At3g28050	41.700%	Swiss-Prot	Medium
`Q945L4`	Arabidopsis thaliana	sp\|Q945L4\|WTR40_ARATH WAT1-related protein At5g40210	43.800%	Swiss-Prot	Medium
`O80638`	Arabidopsis thaliana	sp\|O80638\|WTR14_ARATH WAT1-related protein At2g39510	32.500%	Swiss-Prot	Medium

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