TkA04G033650 | RubberDandelionOmics

Gene overview

TkA04G033650

Reference: TK1151 Chr: Chr04 Coordinates: 9019376-9021920 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1662 bp · TkA04G033650|TK1151|cDNA

ATGGCCACTATGACCGCCGCACGACGGCAACGGATTCTGATACGAGCATTACACGCCGGCGTTCTTTGTGTCCTTGTAAGAACGGTGTACCTCATTATCACCACCACCCCTACCACCGCCCCCACCAGCATGACCACCACTCGCCAAAGCTCCTGGAAATCCGACACCGACGAACAGCTCGTAAAATACTACTCCTCCATTTTTCAAGATTTAATCGCCGAAGGATTTCTTACAGTTAAATCAAGAACACTCATCATCGG...

CDS

Download CDS FASTA

1662 bp · TkA04G033650|TK1151|CDS

ATGGCCACTATGACCGCCGCACGACGGCAACGGATTCTGATACGAGCATTACACGCCGGCGTTCTTTGTGTCCTTGTAAGAACGGTGTACCTCATTATCACCACCACCCCTACCACCGCCCCCACCAGCATGACCACCACTCGCCAAAGCTCCTGGAAATCCGACACCGACGAACAGCTCGTAAAATACTACTCCTCCATTTTTCAAGATTTAATCGCCGAAGGATTTCTTACAGTTAAATCAAGAACACTCATCATCGG...

Protein

Download Protein FASTA

553 aa · TkA04G033650|TK1151|PROTEIN

MATMTAARRQRILIRALHAGVLCVLVRTVYLIITTTPTTAPTSMTTTRQSSWKSDTDEQLVKYYSSIFQDLIAEGFLTVKSRTLIIGAESPQCIAALRESGIKYSKSSKKNVRFPFMNNSFDLQFSSHSGLDSSSNPGELSSELSRTLKQEGYLVIHTESKGSYSLNSLLELFDSFKLIRSHEVPVQHWSIPRIREVVLKKQNGVLRRRMNLPGSCSVPAYKKELIQNSEPLIAEEPLKPWISLKRNLKNIKYLPSMADI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G033650`
TK1151 ID	TkA04G033650
OH-1004 ID	LXL04_036617
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	97.900
Protein coverage (%)	TK1151 96.926 / OH-1004 74.341 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA04G033650`
Location	Chr04:9019376-9021920 (+)
Description	Similar to Putative AC transposase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_036617` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0009791 post-embryonic development Biological Process GO:0032196 transposition Biological Process GO:0005634 nucleus Cellular Component GO:0005829 cytosol Cellular Component GO:0003677 DNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0046983 protein dimerization activity Molecular Function
KEGG gene cross-reference	ath:AT3G42170 dosa:Os03g0733400 dosa:Os05g0239150 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.440

Rank 1 · TkA04G033650 · TK1151

Extracellular0.165

Rank 2 · TkA04G033650 · TK1151

Endoplasmic reticulum0.112

Rank 3 · TkA04G033650 · TK1151

Cell membrane0.110

Rank 4 · TkA04G033650 · TK1151

Cytoplasm0.077

Rank 5 · TkA04G033650 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03141Methyltransf_2999-158 aa

PF25276DUF7870113-160 aa

PF08241Methyltransf_11113-156 aa

PF25276DUF7870229-326 aa

PF05050Methyltransf_21270-413 aa

PF25276DUF7870367-461 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G033650	`PF03141`	Methyltransf_29	99	158	0.026	13.9
TkA04G033650	`PF25276`	DUF7870	113	160	2.8e-33	116.2
TkA04G033650	`PF08241`	Methyltransf_11	113	156	0.0024	19.2
TkA04G033650	`PF25276`	DUF7870	229	326	2.8e-33	116.2
TkA04G033650	`PF05050`	Methyltransf_21	270	413	0.00021	22.2
TkA04G033650	`PF25276`	DUF7870	367	461	2.8e-33	116.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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