TkA04G029740 | RubberDandelionOmics

Gene overview

TkA04G029740

Reference: TK1151 Chr: Chr04 Coordinates: 7864490-7866977 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1767 bp · TkA04G029740|TK1151|cDNA

CGTCACTCCGTGTAAACGGTCAAAACGGAAAGCCTCACCCATCCTTCTTTATCTCGCACCCACTGAAATAATACATACACGCTTTCTCTATCTAAAATTGGCATGGATTCCAATGGCTATTCTCCTTTACTTCTTACCACTCTCATAACTAAGCTCCATATGATTTGAAACCCACGAGATCGGAAACACAAAGAGAAAGATGTGGAGGTCATCGTTTTCGGTACTGAAGCAGGGGGTGACATCGGCGGTTGCTAGATCAA...

CDS

Download CDS FASTA

933 bp · TkA04G029740|TK1151|CDS

ATGTGGAGGTCATCGTTTTCGGTACTGAAGCAGGGGGTGACATCGGCGGTTGCTAGATCAAACCCGGTGTCGATTGGATGGAGGAAAACGAGTCTCATTGAATCTAACACCAGGCTATGTGCTTGTTTGTTCTCGACTTCCGTCGGCGGCGGCGGTGGAGGGGTAGGGTTAGGGCAAGGGCAAGGGGAAAAGGGAAATGACGGTAATGATAGTATTACGTTTTCGGAGGCGAAGAAGCTGATGAGATTGGTGAATGTTGA...

Protein

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310 aa · TkA04G029740|TK1151|PROTEIN

MWRSSFSVLKQGVTSAVARSNPVSIGWRKTSLIESNTRLCACLFSTSVGGGGGGVGLGQGQGEKGNDGNDSITFSEAKKLMRLVNVESLKMKLTTEGKETICYSELLEACESMGVTKSNEEAKAFVNVLDEAGVVLIFRDKVYLHPDKVVDLVRRAVPLALTPEDDPRREELKTLQAKQDEIDILAHKQVRRILWMGLGLSLAQISLFFRLTFWDLSWDVMEPIAFFTTASGLIIGYAYFLFTSRDPTYQDLLKRLFLSR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G029740`
TK1151 ID	TkA04G029740
OH-1004 ID	LXL04_036672
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G029740

Location Chr04:7864490-7866977 (+)

Description Similar to At1g09575: Calcium uniporter protein 6, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g09575`	Mitochondrial inner membrane calcium uniporter that mediates calcium uptake into mitochondria.	Physiological Characterization of a Plant Mitochondrial Calcium Uniporter in Vitro and in Vivo.2017 · DOI: 10.1104/pp.16.01359
`At1g57610`	Mitochondrial inner membrane calcium uniporter that mediates calcium uptake into mitochondria (By similarity).	No verified direct reference in this release
`At2g23790`	Mitochondrial inner membrane calcium uniporter that mediates calcium uptake into mitochondria (By similarity).	No verified direct reference in this release
`At4g36820`	Mitochondrial inner membrane calcium uniporter that mediates calcium uptake into mitochondria (By similarity).	No verified direct reference in this release
`At5g66650`	Chloroplastic membrane calcium uniporter that mediates calcium uptake into chloroplast stroma.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_036672 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0036444 calcium import into the mitochondrion Biological Process

GO:0051560 mitochondrial calcium ion homeostasis Biological Process

GO:0070509 calcium ion import Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:1990246 uniplex complex Cellular Component

GO:0005262 calcium channel activity Molecular Function

GO:0015292 uniporter activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G09575

ath:AT1G57610

ath:AT2G23790

ath:AT4G36820

ath:AT5G66650

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.917

Rank 1 · TkA04G029740 · TK1151

Nucleus0.056

Rank 2 · TkA04G029740 · TK1151

Cytoplasm0.050

Rank 3 · TkA04G029740 · TK1151

Plastid0.028

Rank 4 · TkA04G029740 · TK1151

Cell membrane0.022

Rank 5 · TkA04G029740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16095COR-A90-143 aa

PF04678MCU120-278 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G029740	`PF16095`	COR-A	90	143	0.0033	18.0
TkA04G029740	`PF04678`	MCU	120	278	3.3e-50	171.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4I111`	Arabidopsis thaliana	sp\|F4I111\|MCU1_ARATH Calcium uniporter protein 1, mitochondrial	52.000%	Swiss-Prot	High
`Q8VYR0`	Arabidopsis thaliana	sp\|Q8VYR0\|MCU2_ARATH Calcium uniporter protein 2, mitochondrial	57.900%	Swiss-Prot	High
`O64823`	Arabidopsis thaliana	sp\|O64823\|MCU3_ARATH Calcium uniporter protein 3, mitochondrial	38.600%	Swiss-Prot	Medium
`Q1PE15`	Arabidopsis thaliana	sp\|Q1PE15\|MCU4_ARATH Calcium uniporter protein 4, mitochondrial	40.000%	Swiss-Prot	Medium
`Q9LVR5`	Arabidopsis thaliana	sp\|Q9LVR5\|MCU6_ARATH Chloroplastic calcium uniporter protein	39.000%	Swiss-Prot	Medium

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