TkA04G025910 | RubberDandelionOmics

Gene overview

TkA04G025910

Reference: TK1151 Chr: Chr04 Coordinates: 6784100-6785956 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1762 bp · TkA04G025910|TK1151|cDNA

GAGATATTTTTCCATATATTCATACTCTTCCCTATAAAACCAAGTGTCACTTAAGTTTCAAAAACAACAAAACAAAACCATAACAACATGGAACCTTTTCCCCAATTTCTTCCATTGTTAGGGCTTTTTCTTTCTATTCTAATCTACACATACAAAAGAACCACAAGAAACACTATAACAAAATCCACCAAAATAGCACTTCCACAACCACCAGGAGCACAACCTTTTATAGGCCACCTTCATCGTCTACAAGGCAAAGC...

CDS

Download CDS FASTA

1560 bp · TkA04G025910|TK1151|CDS

ATGGAACCTTTTCCCCAATTTCTTCCATTGTTAGGGCTTTTTCTTTCTATTCTAATCTACACATACAAAAGAACCACAAGAAACACTATAACAAAATCCACCAAAATAGCACTTCCACAACCACCAGGAGCACAACCTTTTATAGGCCACCTTCATCGTCTACAAGGCAAAGCTCCAATAGCCAGGATACTAGCAAAAATGGCGGATGATTACGGCCCGGCGTACTCTCTCCGATTAGGTAGCCATCGAGCAATTGTTGT...

Protein

Download Protein FASTA

519 aa · TkA04G025910|TK1151|PROTEIN

MEPFPQFLPLLGLFLSILIYTYKRTTRNTITKSTKIALPQPPGAQPFIGHLHRLQGKAPIARILAKMADDYGPAYSLRLGSHRAIVVSSRQMVKDCFTINDRNFATRPNMAVSRYMGYDSAVFALAPYGPYWREIRKLVTLELLTTHRLEKLRNVRDSEVKYLVNELSKNGGSLVDMTKWFEHLTFNIIVRMLAGKRFSDGGNDEDLQVKEAIKKGLYLSGVFVVSDLIPNLEWMDIGGHVKAMKEASKELDGVLGKWLD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G025910`
TK1151 ID	TkA04G025910
OH-1004 ID	LXL04_036752
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G025910

Location Chr04:6784100-6785956 (-)

Description Similar to CYP82G1: Dimethylnonatriene synthase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g25180`	Involved in the biosynthesis of homoterpenes, attractants of herbivores parasitoids and predators (e.g. predatory mites and parasitoid wasps).	Herbivore-induced and floral homoterpene volatiles are biosynthesized by a single P450 enzyme (CYP82G1) in Arabidopsis.2010 · DOI: 10.1073/pnas.1009975107 Genome-wide association mapping in Arabidopsis identifies novel genes underlying quantitative disease resistance to Alternaria brassicae.2018 · DOI: 10.1111/mpp.12654
`At4g31940`	Can hydroxylate xanthotoxin (8-methoxypsoralen) to form 5- hydroxyxanthotoxin (5-hydroxy-8-methoxypsoralen) in vivo and in vitro.	In planta biocatalysis screen of P450s identifies 8-methoxypsoralen as a substrate for the CYP82C subfamily, yielding original chemical structures.2008 · DOI: 10.1016/j.chembiol.2008.01.008 Arabidopsis CYP82C4 expression is dependent on Fe availability and circadian rhythm, and correlates with genes involved in the early Fe deficiency response.2011 · DOI: 10.1016/j.jplph.2010.11.020
`At4g31970`	Involved in the biosynthetic pathway to 4-hydroxyindole-3- carbonyl nitrile (4-OH-ICN), a cyanogenic metabolite required for inducible pathogen defense.	In planta biocatalysis screen of P450s identifies 8-methoxypsoralen as a substrate for the CYP82C subfamily, yielding original chemical structures.2008 · DOI: 10.1016/j.chembiol.2008.01.008 A new cyanogenic metabolite in Arabidopsis required for inducible pathogen defence.2015 · DOI: 10.1038/nature14907

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036752 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002213 defense response to insect Biological Process

GO:0006952 defense response Biological Process

GO:0009617 response to bacterium Biological Process

GO:0010039 response to iron ion Biological Process

GO:0010446 response to alkaline pH Biological Process

GO:0016114 terpenoid biosynthetic process Biological Process

GO:0046246 terpene biosynthetic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0071281 cellular response to iron ion Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0106146 sideretin biosynthesis Biological Process

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ag:AYU65303

ath:AT3G25180

ath:AT4G31940

ath:AT4G31970

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.917

Rank 1 · TkA04G025910 · TK1151

Plastid0.041

Rank 2 · TkA04G025910 · TK1151

Cell membrane0.037

Rank 3 · TkA04G025910 · TK1151

Cytoplasm0.026

Rank 4 · TkA04G025910 · TK1151

Golgi apparatus0.020

Rank 5 · TkA04G025910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067p45039-498 aa

PF28781Exophilin5_N242-273 aa

PF28781Exophilin5_N348-362 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G025910	`PF00067`	p450	39	498	2.5e-96	324.0
TkA04G025910	`PF28781`	Exophilin5_N	242	273	0.32	11.8
TkA04G025910	`PF28781`	Exophilin5_N	348	362	0.32	11.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LSF8`	Arabidopsis thaliana	sp\|Q9LSF8\|C82G1_ARATH Dimethylnonatriene synthase	50.700%	Swiss-Prot	High
`Q9SZ46`	Arabidopsis thaliana	sp\|Q9SZ46\|C82C4_ARATH Xanthotoxin 5-hydroxylase CYP82C4	48.700%	Swiss-Prot	Medium
`O49394`	Arabidopsis thaliana	sp\|O49394\|C82C2_ARATH Xanthotoxin 5-hydroxylase CYP82C2	48.500%	Swiss-Prot	Medium

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