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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G025130
Reference: TK1151 Chr: Chr04 Coordinates: 6570774-6572513 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1164 bp · TkA04G025130|TK1151|cDNA

AAGAAAGAAACCGCTTAAAGTTTTCTTCCTCATATATCCTCCCCCAAATCCCCCTTCTTCGCAAACCCTAGACATGGAACAAGAACTCTAAATCCGCTTTCTCTCTGTCAATCTCATCATTTTATCACTCCAGACTCTCGATCGGTCCTCAATCGCAAACGGGTTCATGTATCGTTCTTTTTCATGTCTGTGTGCGTATGGTGGTGATGAGATATGACTACTCTTTCGCATGATTATTATGCAGAAAGCACATCATGAAC...

CDS

Download CDS FASTA

663 bp · TkA04G025130|TK1151|CDS

ATGAACACTCAAGGTCAAGTCGTGAGGTACGCAAGAGGTGGTAAACGAAGGAAAGGAGTACCAGATCTTAATGTTCCTCCTCCAAATGAAAACCACGAACAAACAAGCGGCCAAACTGTGTCAGTATCTCGGACTAATCCTCCATCTATTCCACTACCTGCTACAGGATCAACACAACCTGCACTAATCGACGTTGAAGAACTAGATGATGACGTCGTCATTTCCTCCCCAAGAGCATTCGAAGAAGCTAAAAACAAATC...

Protein

Download Protein FASTA

220 aa · TkA04G025130|TK1151|PROTEIN

MNTQGQVVRYARGGKRRKGVPDLNVPPPNENHEQTSGQTVSVSRTNPPSIPLPATGSTQPALIDVEELDDDVVISSPRAFEEAKNKSRRIRRRALVVDVDSARVVHNHGNKRKRGNSNPNPIQPINCEIYNLEGSSGSMRGKSRVVVPPPPPPPPPPPPEPTFSCPVCMGPLVEEVTTKCGHIFCKGCIKAAISAQSKCPTCRRKVTNKDIIRVYLPTTK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G025130
TK1151 IDTkA04G025130
OH-1004 IDLXL04_036768
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G025130
LocationChr04:6570774-6572513 (+)
DescriptionSimilar to Rnf4: E3 ubiquitin-protein ligase RNF4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036768 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0006974 DNA damage response Biological Process
GO:0007283 spermatogenesis Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0030154 cell differentiation Biological Process
GO:0032355 response to estradiol Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
GO:0044752 response to human chorionic gonadotropin Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process
GO:0046685 response to arsenic-containing substance Biological Process
KEGG gene cross-reference
bta:767973
hsa:6047
mmu:19822
mmu:67504
rno:29274
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.978
Rank 1 · TkA04G025130 · TK1151
Cytoplasm0.111
Rank 2 · TkA04G025130 · TK1151
Cell membrane0.016
Rank 3 · TkA04G025130 · TK1151
Mitochondrion0.010
Rank 4 · TkA04G025130 · TK1151
Endoplasmic reticulum0.009
Rank 5 · TkA04G025130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16101PRIMA134-65 aa
PF16101PRIMA1135-163 aa
PF09723Zn_ribbon_8162-173 aa
PF11789zf-Nse163-202 aa
PF13639zf-RING_2164-203 aa
PF13920zf-C3HC4_3164-207 aa
PF16685zf-RING_10164-204 aa
PF14447Prok-RING_4164-169 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G025130PF16101PRIMA134653.78.0
TkA04G025130PF16101PRIMA11351633.78.0
TkA04G025130PF09723Zn_ribbon_81621737.27.4
TkA04G025130PF11789zf-Nse1632020.07213.6
TkA04G025130PF13639zf-RING_21642032.9e-0937.8
TkA04G025130PF13920zf-C3HC4_31642076.9e-0832.9
TkA04G025130PF16685zf-RING_101642040.0008120.2
TkA04G025130PF14447Prok-RING_41641690.002318.5
TkA04G025130PF12861zf-ANAPC111642090.01915.7
TkA04G025130PF04423Rad50_zn_hook1641750.02615.0
TkA04G025130PF13923zf-C3HC4_21652022.5e-1040.7
TkA04G025130PF00097zf-C3HC41652027.3e-1039.3
TkA04G025130PF13445zf-RING_UBOX1652006.7e-0729.9
TkA04G025130PF14634zf-RING_51652041.3e-0629.0
TkA04G025130PF15227zf-C3HC4_41652023.5e-0524.5
TkA04G025130PF12678zf-rbx11652030.0002821.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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