TkA04G022700 | RubberDandelionOmics

Gene overview

TkA04G022700

Reference: TK1151 Chr: Chr04 Coordinates: 5756959-5758765 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1164 bp · TkA04G022700|TK1151|cDNA

ATGGATGTTACTCTTGGCTTGTTAGGTAATTCTCCGGGAGGTGACGATGGTGGCGGTGGTGGTGGAGTGCCGTCTGGTGGGTCGACCACCGCTAGGTCAATATTGACAGTATCGAAGGAAGATAACAAGAACAGCTTGGTTGATGAAAATTCAGATGATCTTGAATTGGGACTCGGGTTGAGTATCGGCAGCGGTGCTAAAGATTTTCCTTCTCTGGTTTCTAAACCCAATTCGTCTTCTTCGTCTTCTTCTGTAAATAT...

CDS

Download CDS FASTA

759 bp · TkA04G022700|TK1151|CDS

ATGGATGTTACTCTTGGCTTGTTAGGTAATTCTCCGGGAGGTGACGATGGTGGCGGTGGTGGTGGAGTGCCGTCTGGTGGGTCGACCACCGCTAGGTCAATATTGACAGTATCGAAGGAAGATAACAAGAACAGCTTGGTTGATGAAAATTCAGATGATCTTGAATTGGGACTCGGGTTGAGTATCGGCAGCGGTGCTAAAGATTTTCCTTCTCTGGTTTCTAAACCCAATTCGTCTTCTTCGTCTTCTTCTGTAAATAT...

Protein

Download Protein FASTA

252 aa · TkA04G022700|TK1151|PROTEIN

MDVTLGLLGNSPGGDDGGGGGGVPSGGSTTARSILTVSKEDNKNSLVDENSDDLELGLGLSIGSGAKDFPSLVSKPNSSSSSSSVNIPNSSTSGTKRTAADSISPPNGTSVVGWPPVSKAHRIPSLANNSKLQTDELISTPEETKNKNKSKYRSVKVNMDGTLIGRKVDLNGHTSYEALAQTLEEMFWGRRGSSKLLDGTSEFVLTYEDKDGDCMLVGDVPWRMFLTSVKRLRIMKNSESSEFSRNQQETHH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G022700`
TK1151 ID	TkA04G022700
OH-1004 ID	LXL04_036820
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	77.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G022700

Location Chr04:5756959-5758765 (+)

Description Similar to IAA12: Auxin-responsive protein IAA12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g04550`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`At2g33310`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`At4g28640`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XB18`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`Os02g0817600`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036820 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009880 embryonic pattern specification Biological Process

GO:0010051 xylem and phloem pattern formation Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0048364 root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G04550

ath:AT2G33310

ath:AT4G28640

dosa:Os02g0817600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.837

Rank 1 · TkA04G022700 · TK1151

Cytoplasm0.190

Rank 2 · TkA04G022700 · TK1151

Cell membrane0.098

Rank 3 · TkA04G022700 · TK1151

Endoplasmic reticulum0.041

Rank 4 · TkA04G022700 · TK1151

Plastid0.018

Rank 5 · TkA04G022700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02309AUX_IAA51-241 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G022700	`PF02309`	AUX_IAA	51	241	5.4e-47	161.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q38830`	Arabidopsis thaliana	sp\|Q38830\|IAA12_ARATH Auxin-responsive protein IAA12	45.900%	Swiss-Prot	Medium
`Q38831`	Arabidopsis thaliana	sp\|Q38831\|IAA13_ARATH Auxin-responsive protein IAA13	46.400%	Swiss-Prot	Medium
`Q38829`	Arabidopsis thaliana	sp\|Q38829\|IAA11_ARATH Auxin-responsive protein IAA11	44.300%	Swiss-Prot	Medium
`A2XB18`	Oryza sativa subsp. indica	sp\|A2XB18\|IAA10_ORYSI Auxin-responsive protein IAA10	47.200%	Swiss-Prot	Medium
`Q0DWF2`	Oryza sativa subsp. japonica	sp\|Q0DWF2\|IAA10_ORYSJ Auxin-responsive protein IAA10	47.200%	Swiss-Prot	Medium

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