RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G021830
Reference: TK1151 Chr: Chr04 Coordinates: 5541498-5543428 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1701 bp · TkA04G021830|TK1151|cDNA

ATGTTTTCATCCTTCACTAATCTTAAACATCTAAACCTCAAAACAAATGACATTTATGGTGGCATCCCACTTGAGATCAAGCATCTTTCTAAACTCACATTCCTCGATCTCTCCGGTAATCGTTTTTCTGGAATAATCCCGCCAGAAATAGGAATATTAACGAATCTCAACACCCTCCGATTAAACCAGAACCAATTTACCGGTTCAATCCCTACGTCTTTAGGAAATCTAACCAACTTGGTTTGTTTTCGTGCCGATGA...

CDS

Download CDS FASTA

1701 bp · TkA04G021830|TK1151|CDS

ATGTTTTCATCCTTCACTAATCTTAAACATCTAAACCTCAAAACAAATGACATTTATGGTGGCATCCCACTTGAGATCAAGCATCTTTCTAAACTCACATTCCTCGATCTCTCCGGTAATCGTTTTTCTGGAATAATCCCGCCAGAAATAGGAATATTAACGAATCTCAACACCCTCCGATTAAACCAGAACCAATTTACCGGTTCAATCCCTACGTCTTTAGGAAATCTAACCAACTTGGTTTGTTTTCGTGCCGATGA...

Protein

Download Protein FASTA

566 aa · TkA04G021830|TK1151|PROTEIN

MFSSFTNLKHLNLKTNDIYGGIPLEIKHLSKLTFLDLSGNRFSGIIPPEIGILTNLNTLRLNQNQFTGSIPTSLGNLTNLVCFRADDNKLFGYIPQELGKLVNLVNINVSFNFQKGPIPSTLGNLTNLSTLYLHQNNLSNPIPPSLGNLASLMVLSIYMNELSGRIPDELVIMKSLTVLMIGHNKLTGSLPVTLSNLTKLRILDVHENLLSGLIPPQLEKLELGNMNSLVEIYMVKNRLIGQIPNSLGNLRNLEYFVLHN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G021830
TK1151 IDTkA04G021830
OH-1004 IDLXL04_036830
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)82.800
Protein coverage (%)TK1151 29.859 / OH-1004 22.656
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G021830
LocationChr04:5541498-5543428 (-)
DescriptionSimilar to HCR9-0: Receptor-like protein Cf-9 homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g47890 Receptor-like protein 7. No verified direct reference in this release
At2g15080 Receptor-like protein 19. No verified direct reference in this release
At4g13880 Plays a role in root hair development.
Uncovering genes and ploidy involved in the high diversity in root hair density, length and response to local scarce phosphate in Arabidopsis thaliana.2015 · DOI: 10.1371/journal.pone.0120604
At2g33060 Receptor like protein 27. No verified direct reference in this release
At3g23010 Receptor-like protein 36. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036830 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0010073 meristem maintenance Biological Process
GO:0010200 response to chitin Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G71400
ath:AT5G25910
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.839
Rank 1 · TkA04G021830 · TK1151
Endoplasmic reticulum0.084
Rank 2 · TkA04G021830 · TK1151
Cytoplasm0.064
Rank 3 · TkA04G021830 · TK1151
Nucleus0.042
Rank 4 · TkA04G021830 · TK1151
Extracellular0.028
Rank 5 · TkA04G021830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13855LRR_82-42 aa
PF24141LRR_ComC2-96 aa
PF23598LRR_143-108 aa
PF24048LRR_NXF1-55-41 aa
PF12799LRR_46-41 aa
PF13516LRR_66-18 aa
PF00560LRR_17-29 aa
PF23952LRR_EndoS17-44 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G021830PF13855LRR_82422.1e-43146.6
TkA04G021830PF24141LRR_ComC2963.4e-0730.9
TkA04G021830PF23598LRR_1431089.2e-38130.6
TkA04G021830PF24048LRR_NXF1-55410.001319.1
TkA04G021830PF12799LRR_46411.5e-34118.0
TkA04G021830PF13516LRR_66180.0002521.5
TkA04G021830PF00560LRR_17296.8e-57177.8
TkA04G021830PF23952LRR_EndoS17446.77.7
TkA04G021830PF24758LRR_At5g5637022629.5e-0522.9
TkA04G021830PF25013LRR_Zer-126392.8e-0628.3
TkA04G021830PF23211LRR_LRWD126670.07113.5
TkA04G021830PF13516LRR_628430.0002521.5
TkA04G021830PF00560LRR_131516.8e-57177.8
TkA04G021830PF12799LRR_431671.5e-34118.0
TkA04G021830PF13855LRR_853902.1e-43146.6
TkA04G021830PF29252LRR_NLRC453890.799.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C699Arabidopsis thalianasp|Q9C699|RLP7_ARATH Receptor-like protein 735.600%Swiss-ProtLow
Q9ZUK3Arabidopsis thalianasp|Q9ZUK3|RLP19_ARATH Receptor-like protein 1936.500%Swiss-ProtLow
F4JTU7Arabidopsis thalianasp|F4JTU7|RLP48_ARATH Receptor-like protein 4834.000%Swiss-ProtLow
F4IUU1Arabidopsis thalianasp|F4IUU1|RLP27_ARATH Receptor like protein 2734.000%Swiss-ProtLow
Q1PEN0Arabidopsis thalianasp|Q1PEN0|RLP36_ARATH Receptor-like protein 3635.600%Swiss-ProtLow

JBrowse

View in Genome Browser