TkA04G017690 | RubberDandelionOmics

Gene overview

TkA04G017690

Reference: TK1151 Chr: Chr04 Coordinates: 4423623-4428401 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2312 bp · TkA04G017690|TK1151|cDNA

TTCAATTTATAGTTTTATACCATGAACATGGCGTTCACACCTCCTCCTCCTTCTTCCCCGCGTCCCCTTTGATTCTCTCTCTAAATCTCTTCTCTCTTTTCCTTTTTCCTCTCAAATCAGCAAAGAATCACACGCTATTTTACTGACAAACGTCCCACAATAAGGTAAAAACCATCCTCAAAAACCCTAGTCACTACTACTACTACTACTACTACCACCATCAAATCTCGATCTTCAGAAGTTTTCAACCTGCACTCCAA...

CDS

Download CDS FASTA

1656 bp · TkA04G017690|TK1151|CDS

ATGAAGCTTTTTCGCCAGCGTACGAGGATATGCATCCTCTCTTTGCTTTTCCTCTCTGTCTTTTGCCCGATCCTTTTGCTCAACGAATCGAAGGGATTTATTGAAGACTTATCAAGTTTTAAAGGCAGGAGGGATTTGCTGAAGTTGAATCTAGTAAAGCAGGAGGAAGATGAAGGCTTCAGGGAACCCATTTTAAATGTGTACAAAGATGTAAATGTTGATCCTCTTCTCAGTTCCAGATCCCCAGATGTTCTTAACAA...

Protein

Download Protein FASTA

551 aa · TkA04G017690|TK1151|PROTEIN

MKLFRQRTRICILSLLFLSVFCPILLLNESKGFIEDLSSFKGRRDLLKLNLVKQEEDEGFREPILNVYKDVNVDPLLSSRSPDVLNNSHEPISGKNNEFTEQNEGVPDEREEKMLLSPGKKGDIGRVRATLEHRALDKKIKEIKDQLIRAKAYLNFAIPANNAHLIKELRLRIKELERAMGDVTKDSDLSKRALQRMRAMEVSLQKASRIYPDCCGMVKKLRAMTNNAEEMVRVQKEQETFLVQLAGRTTPKGLHCLSMR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G017690`
TK1151 ID	TkA04G017690
OH-1004 ID	LXL04_036915
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 96.915 / OH-1004 92.708 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G017690

Location Chr04:4423623-4428401 (+)

Description Similar to GAUT6: Probable galacturonosyltransferase 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g06780`	Probably involved in pectin biosynthesis in cell walls.	No verified direct reference in this release
`At2g30575`	May be involved in pectin and/or xylans biosynthesis in cell walls.	No verified direct reference in this release
`At5g47780`	May be involved in pectin and/or xylans biosynthesis in cell walls.	No verified direct reference in this release
`At3g61130`	Involved in pectin biosynthesis.	Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galacturonosyltransferase.2006 · DOI: 10.1073/pnas.0600120103
`At4g38270`	May be involved in pectin and/or xylans biosynthesis in cell walls.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036915 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010289 homogalacturonan biosynthetic process Biological Process

GO:0045489 pectin biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000137 Golgi cis cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0005802 trans-Golgi network Cellular Component

KEGG gene cross-reference

ath:AT1G06780

ath:AT2G30575

ath:AT3G61130

ath:AT4G38270

ath:AT5G47780

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.776

Rank 1 · TkA04G017690 · TK1151

Endoplasmic reticulum0.106

Rank 2 · TkA04G017690 · TK1151

Cytoplasm0.068

Rank 3 · TkA04G017690 · TK1151

Extracellular0.064

Rank 4 · TkA04G017690 · TK1151

Cell membrane0.060

Rank 5 · TkA04G017690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19652DUF6155121-175 aa

PF25557GAUT_1137-211 aa

PF01501Glyco_transf_8256-531 aa

PF19652DUF6155259-280 aa

PF18404Glyco_transf_24385-429 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G017690	`PF19652`	DUF6155	121	175	0.047	14.2
TkA04G017690	`PF25557`	GAUT_1	137	211	2e-27	96.0
TkA04G017690	`PF01501`	Glyco_transf_8	256	531	1.3e-51	176.3
TkA04G017690	`PF19652`	DUF6155	259	280	0.047	14.2
TkA04G017690	`PF18404`	Glyco_transf_24	385	429	0.069	13.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M9Y5`	Arabidopsis thaliana	sp\|Q9M9Y5\|GAUT6_ARATH Probable galacturonosyltransferase 6	48.700%	Swiss-Prot	Medium
`Q8RXE1`	Arabidopsis thaliana	sp\|Q8RXE1\|GAUT5_ARATH Probable galacturonosyltransferase 5	47.500%	Swiss-Prot	Medium
`Q93ZX7`	Arabidopsis thaliana	sp\|Q93ZX7\|GAUT4_ARATH Probable galacturonosyltransferase 4	37.300%	Swiss-Prot	Medium
`Q9LE59`	Arabidopsis thaliana	sp\|Q9LE59\|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase	44.200%	Swiss-Prot	Medium
`Q0WQD2`	Arabidopsis thaliana	sp\|Q0WQD2\|GAUT3_ARATH Probable galacturonosyltransferase 3	42.000%	Swiss-Prot	Medium

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