TkA04G012230 | RubberDandelionOmics

Gene overview

TkA04G012230

Reference: TK1151 Chr: Chr04 Coordinates: 3040427-3043691 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2518 bp · TkA04G012230|TK1151|cDNA

GACAAATCCCTAGATTTCATCAAGGTTTAATAGGGACAATTGTCGACATTTATGATTAAGCACCAATTGCGGGAGACTCTTCAATATTATTCCCACTATTTCTCTCCCCACTAAACCCCACGAAACCTCACCTCCGACAAACATCCCCTCCACTTCCCCAACTCAAAATTCGCATTCTTTTAAACATTTTATCGATTCTCCATTTATTTACCAATAATTCACATCCTTACAACCTTCATCTTCATCGCTAATCATCAAGA...

CDS

Download CDS FASTA

1368 bp · TkA04G012230|TK1151|CDS

ATGACCCATTTGGAGTTCTTGAAGAAATTCAAGAAACTGAAACCATCTGAACTTGGGTGTTTCTGCTTCAGTTTTTGCTTCATCGTATGCCTCTTTTTCTTGGATTATCGGTCCTTGAGTAAAGGGTTCAAGGCTCGTGGGTTCCATGGGTCGAGTTTATGGTCTGGGTTCAGTGCATCTAGTTCGTCTTCTTCTTCTTCTTCTTCTTCGAGTCGGGATCTTTTCGGCTTTCTTGAAATGGGTCATGGTGAAAACTGTAA...

Protein

Download Protein FASTA

455 aa · TkA04G012230|TK1151|PROTEIN

MTHLEFLKKFKKLKPSELGCFCFSFCFIVCLFFLDYRSLSKGFKARGFHGSSLWSGFSASSSSSSSSSSSSRDLFGFLEMGHGENCNIFDGNWVWDDSYPLYDSKDCLLLDDGFRCSENGRIDSFYTKWRWQPRDCNLPRFDAKTMLERLRNRRLAFVGDSIGRNQWESLLCLLSSAITNTSSIYEINGRPITKHTGFLVFRFSDFNCTIEYYRAPYLVLQSRPPPGSQKQVRTTLKLDKMDWSAWKWRHADVIVFNSGH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G012230`
TK1151 ID	TkA04G012230
OH-1004 ID	LXL04_036985
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G012230

Location Chr04:3040427-3043691 (+)

Description Similar to TBL10: Protein trichome birefringence-like 10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g06080`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At5g19160`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At3g11570`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At5g06230`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At3g62390`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036985 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007623 circadian rhythm Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0008374 O-acyltransferase activity Molecular Function

GO:0016413 O-acetyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT3G06080

ath:AT3G11570

ath:AT3G62390

ath:AT5G06230

ath:AT5G19160

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.433

Rank 1 · TkA04G012230 · TK1151

Cell membrane0.113

Rank 2 · TkA04G012230 · TK1151

Endoplasmic reticulum0.073

Rank 3 · TkA04G012230 · TK1151

Extracellular0.066

Rank 4 · TkA04G012230 · TK1151

Plastid0.039

Rank 5 · TkA04G012230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14416PMR5N84-137 aa

PF24536NXPE4_C131-174 aa

PF13839PC-Esterase138-424 aa

PF14416PMR5N242-249 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G012230	`PF14416`	PMR5N	84	137	1.5e-20	73.9
TkA04G012230	`PF24536`	NXPE4_C	131	174	0.013	15.8
TkA04G012230	`PF13839`	PC-Esterase	138	424	4.3e-98	329.5
TkA04G012230	`PF14416`	PMR5N	242	249	1.5e-20	73.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LDG2`	Arabidopsis thaliana	sp\|Q9LDG2\|TBL10_ARATH Protein trichome birefringence-like 10	59.200%	Swiss-Prot	High
`Q5BPJ0`	Arabidopsis thaliana	sp\|Q5BPJ0\|TBL11_ARATH Protein trichome birefringence-like 11	57.200%	Swiss-Prot	High
`Q9CAX1`	Arabidopsis thaliana	sp\|Q9CAX1\|TBL8_ARATH Protein trichome birefringence-like 8	46.100%	Swiss-Prot	Medium
`Q9FFZ4`	Arabidopsis thaliana	sp\|Q9FFZ4\|TBL9_ARATH Protein trichome birefringence-like 9	46.800%	Swiss-Prot	Medium
`Q9LZQ1`	Arabidopsis thaliana	sp\|Q9LZQ1\|TBL6_ARATH Protein trichome birefringence-like 6	42.500%	Swiss-Prot	Medium

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