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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G010950
Reference: TK1151 Chr: Chr04 Coordinates: 2614937-2624990 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5289 bp · TkA04G010950|TK1151|cDNA

GTACTTTTCAACAACCATTGATCACCATCGTCTTCGCCCATTTTGGAGGGAAGATTTTCTTATAAATGTAATTATATCGACATTTTTTCGGCATCTTAAGAACAAAGAACAAGAATATAACTGTATTATATTTTCCGTCAACAAAGTACAAACAAGTATAAGTAATCTTCTTGAATACCCCGAGGTTAATTTCGTCAACAAAGTACAAACAAATATGATAAATAAAAAAGAAATTGCTCTTTTACTTTTACAAACTCTAA...

CDS

Download CDS FASTA

894 bp · TkA04G010950|TK1151|CDS

ATGCTCCAAGACCGCCCGGGTTCTCCTATGATGACGTCACATCCAGGCTGGAAAGTCGGGAATGCTTCTTCAGAAGTCGAAAATGCAGGAATGGTGATTGTGAAGGATGTTATATCAGAAGCTGTTATATCACAGTTTAGAGCCCATTCAAGTCCACTGTCTGCATTATGTTTTGATCCAAGTGGGACCCTTTTAGTTACAGCCTCAATACATGGCAATAATGTAAATATCTTCCGAATCATGCCTTGTACTCGAGGTGG...

Protein

Download Protein FASTA

297 aa · TkA04G010950|TK1151|PROTEIN

MLQDRPGSPMMTSHPGWKVGNASSEVENAGMVIVKDVISEAVISQFRAHSSPLSALCFDPSGTLLVTASIHGNNVNIFRIMPCTRGGNCSSNQTHDWSSSHVLLYKLHRGITSAVIQDISFSRYSQWISIVSSKGTCHVFSVSPFGGDVSNRNHGFRSQSVNQPVKSLPWWSTPSFVTENQSLPPPPPLTLSVVGRIKNNSSGFLKTQMPPGAVASVFHNSMACNNHGGLKNADSLECLLVYTPSGYVIQYELLSSMGIQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G010950
TK1151 IDTkA04G010950
OH-1004 IDLXL04_037013
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)98.900
Protein coverage (%)TK1151 95.623 / OH-1004 33.333
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G010950
LocationChr04:2614937-2624990 (-)
DescriptionSimilar to ATG18H: Autophagy-related protein 18h
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g54710 The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). No verified direct reference in this release
At1g03380 The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). No verified direct reference in this release
At5g54730 The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037013 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006914 autophagy Biological Process
GO:0007267 cell-cell signaling Biological Process
GO:0010595 positive regulation of endothelial cell migration Biological Process
GO:0015031 protein transport Biological Process
GO:0032956 regulation of actin cytoskeleton organization Biological Process
GO:0042594 response to starvation Biological Process
GO:0043085 positive regulation of catalytic activity Biological Process
GO:0043627 response to estrogen Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process
GO:0071391 cellular response to estrogen stimulus Biological Process
GO:0000407 phagophore assembly site Cellular Component
KEGG gene cross-reference
ath:AT1G03380
ath:AT1G54710
ath:AT5G54730
hsa:54828
mmu:192197
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.558
Rank 1 · TkA04G010950 · TK1151
Nucleus0.245
Rank 2 · TkA04G010950 · TK1151
Lysosome / Vacuole0.160
Rank 3 · TkA04G010950 · TK1151
Golgi apparatus0.160
Rank 4 · TkA04G010950 · TK1151
Cell membrane0.095
Rank 5 · TkA04G010950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21034BCAS3_WD4026-155 aa
PF23414Beta-prop_EML_229-141 aa
PF21032PROPPIN29-142 aa
PF24814WD40_Prp1929-78 aa
PF25173Beta-prop_WDR3_1st30-69 aa
PF25175Beta-prop_WDR531-77 aa
PF25168Beta-prop_WDR36-Utp21_2nd31-71 aa
PF25174Beta-prop_THOC331-70 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G010950PF21034BCAS3_WD40261552.1e-32113.1
TkA04G010950PF23414Beta-prop_EML_2291410.002218.1
TkA04G010950PF21032PROPPIN291420.008216.1
TkA04G010950PF24814WD40_Prp1929780.03214.0
TkA04G010950PF25173Beta-prop_WDR3_1st30690.00716.8
TkA04G010950PF25175Beta-prop_WDR531779.7e-0522.5
TkA04G010950PF25168Beta-prop_WDR36-Utp21_2nd31710.00218.2
TkA04G010950PF25174Beta-prop_THOC331700.0214.6
TkA04G010950PF23381Beta-prop_IFT122_1st32700.04213.9
TkA04G010950PF24817WD40_WDHD1_1st381340.008616.0
TkA04G010950PF00400WD4043693.4e-0628.1
TkA04G010950PF23381Beta-prop_IFT122_1st1051570.04213.9
TkA04G010950PF00400WD401121403.4e-0628.1
TkA04G010950PF25168Beta-prop_WDR36-Utp21_2nd1131420.00218.2
TkA04G010950PF23414Beta-prop_EML_21131790.002218.1
TkA04G010950PF25175Beta-prop_WDR51141429.7e-0522.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8H1Q5Arabidopsis thalianasp|Q8H1Q5|AT18H_ARATH Autophagy-related protein 18h52.500%Swiss-ProtHigh
Q8GUL1Arabidopsis thalianasp|Q8GUL1|AT18G_ARATH Autophagy-related protein 18g48.500%Swiss-ProtMedium
Q9FH32Arabidopsis thalianasp|Q9FH32|AT18F_ARATH Autophagy-related protein 18f34.400%Swiss-ProtMedium

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