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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G010470
Reference: TK1151 Chr: Chr04 Coordinates: 2504222-2507640 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2409 bp · TkA04G010470|TK1151|cDNA

ATGTTGTACAGTTCAAATAGCGACTATGTAACTGGTGGTTTAGGTATTGGCTCCATCAGAGCCCAAAACTTAGCTCTCCTAATCAAATGGTGGTGGAAACTCAAGGAAGACCCGTCATCTATTTGGAGCCGCTCGATTAGAGGTATTCACAATCTGGAGAACAAGCCGCTTGATTACTTCTCTAAGAAAACCATTTCAGGTGTCTGGAAGAACATAGCTAGTGTGCAAGCTGATATTGAAACTCTGGGGTTAAATTTATA...

CDS

Download CDS FASTA

2409 bp · TkA04G010470|TK1151|CDS

ATGTTGTACAGTTCAAATAGCGACTATGTAACTGGTGGTTTAGGTATTGGCTCCATCAGAGCCCAAAACTTAGCTCTCCTAATCAAATGGTGGTGGAAACTCAAGGAAGACCCGTCATCTATTTGGAGCCGCTCGATTAGAGGTATTCACAATCTGGAGAACAAGCCGCTTGATTACTTCTCTAAGAAAACCATTTCAGGTGTCTGGAAGAACATAGCTAGTGTGCAAGCTGATATTGAAACTCTGGGGTTAAATTTATA...

Protein

Download Protein FASTA

802 aa · TkA04G010470|TK1151|PROTEIN

MLYSSNSDYVTGGLGIGSIRAQNLALLIKWWWKLKEDPSSIWSRSIRGIHNLENKPLDYFSKKTISGVWKNIASVQADIETLGLNLYDIFNQTLKSGDKTQFWCDRWLEKGKLMHIHHSLYEMETKKKCLVREGISATGPTWRWKTESGMGDLAGEINRLLADMGQIQLREGSDHLVCKLAKDVSCFLWRAVIGRIPSANALSQRGVKIDSASCGSCIGGIDCADHLLIACPYACLIRENIFRWCGIELIEINTVGELVK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G010470
TK1151 IDTkA04G010470
OH-1004 IDLXL04_001102
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)62.700
Protein coverage (%)TK1151 47.506 / OH-1004 80.802
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G010470
LocationChr04:2504222-2507640 (-)
DescriptionSimilar to VPYL: Protein VAPYRIN-LIKE
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001102 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002237 response to molecule of bacterial origin Biological Process
GO:0009609 response to symbiotic bacterium Biological Process
GO:0009610 response to symbiotic fungus Biological Process
GO:0009877 nodulation Biological Process
GO:0010247 detection of phosphate ion Biological Process
GO:0036377 arbuscular mycorrhizal association Biological Process
GO:0085020 protein K6-linked ubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0085042 periarbuscular membrane Cellular Component
KEGG gene cross-reference
mtr:11415982
mtr:25495843
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.433
Rank 1 · TkA04G010470 · TK1151
Nucleus0.335
Rank 2 · TkA04G010470 · TK1151
Cell membrane0.140
Rank 3 · TkA04G010470 · TK1151
Endoplasmic reticulum0.076
Rank 4 · TkA04G010470 · TK1151
Mitochondrion0.070
Rank 5 · TkA04G010470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13966zf-RVT90-133 aa
PF13966zf-RVT181-235 aa
PF00635Motile_Sperm362-424 aa
PF13606Ank_3473-482 aa
PF23745ANK_LRRK2499-562 aa
PF13857Ank_5502-537 aa
PF12796Ank_2506-561 aa
PF00023Ank506-535 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G010470PF13966zf-RVT901331.2e-0629.8
TkA04G010470PF13966zf-RVT1812351.2e-0629.8
TkA04G010470PF00635Motile_Sperm3624240.1312.8
TkA04G010470PF13606Ank_34734826.7e-2997.1
TkA04G010470PF23745ANK_LRRK24995620.0002221.8
TkA04G010470PF13857Ank_55025372.3e-2692.3
TkA04G010470PF12796Ank_25065611.8e-58195.8
TkA04G010470PF00023Ank5065351.1e-38129.8
TkA04G010470PF13606Ank_35065326.7e-2997.1
TkA04G010470PF24521Ank_KRIT15085594.1e-0833.8
TkA04G010470PF12796Ank_25095981.8e-58195.8
TkA04G010470PF13637Ank_45125563.5e-36123.1
TkA04G010470PF13857Ank_55245582.3e-2692.3
TkA04G010470PF13606Ank_35405596.7e-2997.1
TkA04G010470PF00023Ank5445591.1e-38129.8
TkA04G010470PF12796Ank_25726591.8e-58195.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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